Uses of Package
org.pathvisio.libgpml.model

Packages that use org.pathvisio.libgpml.model

Package	Description
org.pathvisio.libgpml.io	Import and export classes
org.pathvisio.libgpml.model	Classes representing the pathway "model".
org.pathvisio.libgpml.util	Utility classes

Classes in org.pathvisio.libgpml.model used by org.pathvisio.libgpml.io

Class	Description
PathwayModel	This class stores information for a Pathway model.

Classes in org.pathvisio.libgpml.model used by org.pathvisio.libgpml.model

Class	Description
Annotation	This class stores information for an Annotation.
Citation	This class stores information for a Citation.
CopyElement	This class stores information for copied PathwayElement.
DataNode	This class stores information for a DataNode pathway element.
DataNode.State	This class stores all information relevant to a State pathway element.
Drawable	Interface for classes which can be drawn a pathway model canvas.
Evidence	This class stores information for an Evidence.
GPML2013aFormatAbstract	Abstract class for GPML2013a format.
GPML2013aFormatAbstract.AttributeInfo	Name of resource containing the gpml schema definition.
GPML2013aReader	This class reads a PathwayModel from an input source (GPML 2013a).
GPML2013aReader.PublicationXref	Local class to help with reading gpml:Biopax:bp:PublicationXref.
GPML2013aWriter	This class writes a PathwayModel to an output (GPML 2013a).
GPML2021FormatAbstract	Read / write GPML files.
GPML2021Reader	This class reads a PathwayModel from an input source (GPML 2021).
GPML2021Writer	This class writes a PathwayModel to an output (GPML 2021).
GPMLFormatAbstract	Abstract class for GPML format.
GPMLFormatReader	Interface for GPML reading.
GPMLFormatVersion	Interface for GPML format versions.
GPMLFormatWriter	Interface for GPML writing.
GraphicalLine	This class stores information for GraphicalLine pathway element.
GraphLink.LinkableFrom	Classes which want to refer *to* a GraphLink.LinkableTo PathwayElement must implement this interface.
GraphLink.LinkableTo	PathwayElements which can be referred to must implement this interface.
Group	This class stores all information relevant to a Group pathway element.
Groupable	Interface for classes which can belong in a Group.
Interaction	This class stores information for an Interaction pathway element.
Label	This class stores all information relevant to a Label pathway element.
LineElement	This abstract class stores information for a Line pathway element, e.g.
LineElement.Anchor	This class stores information for an Anchor pathway element.
LineElement.GenericPoint	Abstract class of generic point, extended by LineElement.LinePoint and LineElement.Anchor.
LineElement.LinePoint	This class stores information for a Point pathway element.
Pathway	The Pathway class stores information or metadata for a Pathway Model.
Pathway.Author	This class stores information for an Author.
PathwayElement	Abstract class of pathway elements which are part of a pathway, have an elementId, have Comment, Children: DataNode, State, Interaction, GraphicalLine, Label, Shape, Group.
PathwayElement.AnnotationRef	This class stores information for an AnnotationRef with source Annotation, target Referenceable.Annotatable, and a list of PathwayElement.CitationRef and/or PathwayElement.EvidenceRef.
PathwayElement.CitationRef	This class stores information for a CitationRef with source Citation, target Referenceable.Citable, and a list of PathwayElement.AnnotationRef.
PathwayElement.Comment	This class stores all information relevant to a Comment.
PathwayElement.EvidenceRef	This class stores information for a EvidenceRef which references an Evidence.
PathwayElement.InfoRef	Abstract class of PathwayElement.AnnotationRef, PathwayElement.CitationRef, and PathwayElement.EvidenceRef.
PathwayModel	This class stores information for a Pathway model.
PathwayModel.StatusFlagEvent	Event for a change in the "changed" status of this Pathway
PathwayModel.StatusFlagListener	Implement this interface if you want to be notified when the "changed" status changes.
PathwayModelEvent	Used to notify listeners of changes to the model, i.e a Pathway or PathwayElement.
PathwayModelListener	Implement this if you want to be notified of changes to a PathwayModel.
PathwayObject	Abstract class of pathway elements which are part of a pathway and have an elementId.
PathwayObjectEvent	This event is used to notify PathwayObjectListeners of changes to properties of a PathwayElement.
PathwayObjectListener	Implement this if you want to be notified of changes to properties of a PathwayElement.
Referenceable	Interface for Referenceable.Annotatable, Referenceable.Citable, and Referenceable.Evidenceable.
Referenceable.Annotatable	Interface for classes which can hold a List of PathwayElement.AnnotationRef.
Referenceable.Citable	Interface for classes which can hold a List of PathwayElement.CitationRef.
Referenceable.Evidenceable	Interface for classes which can hold a List of PathwayElement.EvidenceRef.
Shape	This class stores all information relevant to a Shape pathway element.
ShapedElement	This class stores information for shaped pathway element DataNode, DataNode.State, Label, Shape, and Group.
Xrefable	Interface for classes which can have an Xref.

Classes in org.pathvisio.libgpml.model used by org.pathvisio.libgpml.util

Class	Description
PathwayObject	Abstract class of pathway elements which are part of a pathway and have an elementId.