Uses of Class
org.pathvisio.libgpml.model.Evidence

Packages that use Evidence

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of Evidence in org.pathvisio.libgpml.model

Fields in org.pathvisio.libgpml.model declared as Evidence

Modifier and Type	Field	Description
private Evidence	TestEvidence.a
private Evidence	TestEvidence.a2
private Evidence	TestReferenceable.e1
private Evidence	PathwayElement.EvidenceRef.evidence

Fields in org.pathvisio.libgpml.model with type parameters of type Evidence

Modifier and Type	Field	Description
private java.util.List<Evidence>	PathwayModel.evidences

Methods in org.pathvisio.libgpml.model that return Evidence

Modifier and Type	Method	Description
protected Evidence	PathwayModel.addEvidence(Evidence evidence)	Adds given evidence to evidences.
Evidence	Evidence.copyRef()	Copies this evidence.
Evidence	PathwayElement.EvidenceRef.getEvidence()	Returns the evidence referenced.
private Evidence	PathwayModel.hasEqualEvidence(Evidence evidence)	Checks if given evidence already exists for the pathway model.

Methods in org.pathvisio.libgpml.model that return types with arguments of type Evidence

Modifier and Type	Method	Description
java.util.List<Evidence>	PathwayModel.getEvidences()	Returns the list of evidences.

Methods in org.pathvisio.libgpml.model with parameters of type Evidence

Modifier and Type	Method	Description
PathwayElement.EvidenceRef	PathwayElement.addEvidence(Evidence evidence)	Creates and adds an evidenceRef to evidenceRefs list.
PathwayElement.EvidenceRef	PathwayElement.AnnotationRef.addEvidence(Evidence evidence)	Creates and adds an evidenceRef to evidenceRefs list.
protected Evidence	PathwayModel.addEvidence(Evidence evidence)	Adds given evidence to evidences.
PathwayElement.EvidenceRef	Referenceable.Evidenceable.addEvidence(Evidence evidence)	Creates and adds an evidenceRef to evidenceRefs list.
void	Evidence.copyValuesFrom(Evidence src)	Copies values from the given source pathway element.
boolean	Evidence.equalsEvidence(Evidence evidence)	Compares this evidence to the given evidence.
private Evidence	PathwayModel.hasEqualEvidence(Evidence evidence)	Checks if given evidence already exists for the pathway model.
void	PathwayModel.removeEvidence(Evidence evidence)	Removes given evidence from evidences list and elementIdToPathwayObject map.
private void	PathwayElement.EvidenceRef.setEvidence(Evidence v)	Sets the source evidence for this evidenceRef.
void	PathwayElement.EvidenceRef.setEvidenceTo(Evidence evidence)	Sets the source evidence for this evidenceRef.

Method parameters in org.pathvisio.libgpml.model with type arguments of type Evidence

Modifier and Type	Method	Description
protected void	GPML2021Writer.writeEvidences(java.util.List<Evidence> evidences, org.jdom2.Element root)	Writes evidence Evidence information.

Constructors in org.pathvisio.libgpml.model with parameters of type Evidence

Constructor	Description
EvidenceRef(Evidence evidence)	Instantiates an EvidenceRef given source Evidence and initializes evidenceRefs lists.