Uses of Class
org.pathvisio.libgpml.model.DataNode.State

Packages that use DataNode.State

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of DataNode.State in org.pathvisio.libgpml.model

Fields in org.pathvisio.libgpml.model declared as DataNode.State

Modifier and Type	Field	Description
private DataNode.State	TestCopy.s1
private DataNode.State	TestState.st1
private DataNode.State	TestState.st2
private DataNode.State	TestState.st3

Fields in org.pathvisio.libgpml.model with type parameters of type DataNode.State

Modifier and Type	Field	Description
private java.util.List<DataNode.State>	DataNode.states

Methods in org.pathvisio.libgpml.model that return DataNode.State

Modifier and Type	Method	Description
DataNode.State	DataNode.addState(java.lang.String elementId, java.lang.String textLabel, StateType type, double relX, double relY)	Instantiates a state with the given properties including elementId.
DataNode.State	DataNode.addState(java.lang.String textLabel, StateType type, double relX, double relY)	Instantiates a state with the given properties.

Methods in org.pathvisio.libgpml.model that return types with arguments of type DataNode.State

Modifier and Type	Method	Description
java.util.List<DataNode.State>	DataNode.getStates()

Methods in org.pathvisio.libgpml.model with parameters of type DataNode.State

Modifier and Type	Method	Description
void	DataNode.addState(DataNode.State state)	Adds given state to states list.
protected void	GPML2013aReader.convertStateCommentToRefs(DataNode.State state, java.util.Set<java.lang.String> elementIdSet)	This method is used to handle DataNode.State PathwayElement.Comment which were manually added to encode phosphosite information.
protected void	GPML2013aWriter.convertStateRefToComments(DataNode.State state, org.jdom2.Element st)	This method handles converting DataNode.State phosphosite PathwayElement.AnnotationRef and Xref information back to PathwayElement.Comment for writing to GPML2013a.
void	DataNode.State.copyValuesFrom(DataNode.State src)	Copies values from the given source pathway element.
void	GraphicalLine.copyValuesFrom(DataNode.State src)	Copies values from the given source pathway element.
boolean	DataNode.hasState(DataNode.State state)	Checks whether states has the given state.
void	DataNode.removeState(DataNode.State state)	Removes given state from states list.

Method parameters in org.pathvisio.libgpml.model with type arguments of type DataNode.State

Modifier and Type	Method	Description
protected void	GPML2021Writer.writeStates(java.util.List<DataNode.State> states, org.jdom2.Element dn)	Writes state DataNode.State information.