Uses of Class
org.pathvisio.libgpml.model.DataNode

Packages that use DataNode

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of DataNode in org.pathvisio.libgpml.model

Fields in org.pathvisio.libgpml.model declared as DataNode

Modifier and Type	Field	Description
private DataNode	TestAlias.alias
private DataNode	TestAlias.d
private DataNode	TestAnnotation.d1
private DataNode	TestCitation.d1
private DataNode	TestEvidence.d1
(package private) DataNode	TestGroup.d1
(package private) DataNode	TestGroupNested.d1
private DataNode	TestReferenceable.d1
private DataNode	TestState.d1
(package private) DataNode	TestGroup.d2
(package private) DataNode	TestGroupNested.d2
(package private) DataNode	TestGroup.d3
(package private) DataNode	TestGroupNested.d3
(package private) DataNode	TestGraph.n1
(package private) DataNode	TestGraph.n2
(package private) DataNode	Test.o
private DataNode	TestCopy.o1

Fields in org.pathvisio.libgpml.model with type parameters of type DataNode

Modifier and Type	Field	Description
private java.util.Map<Group,java.util.Set<DataNode>>	PathwayModel.aliasRefToAliases
private java.util.List<DataNode>	PathwayModel.dataNodes

Methods in org.pathvisio.libgpml.model that return DataNode

Modifier and Type	Method	Description
DataNode	Group.addAlias(java.lang.String textLabel)	Creates and returns an Alias data node for this group.
DataNode	DataNode.State.getDataNode()	Returns the parent data node, outer class, to which the state belongs.

Methods in org.pathvisio.libgpml.model that return types with arguments of type DataNode

Modifier and Type	Method	Description
java.util.List<DataNode>	PathwayModel.getDataNodes()	Returns the list of data node pathway elements.
java.util.Set<DataNode>	PathwayModel.getLinkedAliases(Group aliasRef)	Returns the set of DataNode aliases for a Group aliasRef.

Methods in org.pathvisio.libgpml.model with parameters of type DataNode

Modifier and Type	Method	Description
void	PathwayModel.addDataNode(DataNode dataNode)	Adds the given dataNode to dataNodes list.
void	DataNode.copyValuesFrom(DataNode src)	Copies values from the given source pathway element.
protected boolean	PathwayModel.hasLinkedAlias(Group aliasRef, DataNode alias)	Returns true if pathway model has DataNode alias and Group aliasRef.
protected void	PathwayModel.linkAlias(Group aliasRef, DataNode alias)	Adds mapping of aliasRef to data node alias in the aliasRefToAliases hash map.
protected void	GPML2021Reader.readStates(PathwayModel pathwayModel, DataNode dataNode, org.jdom2.Element dn, java.util.Map<java.lang.String,org.jdom2.Element> refIdToJdomElement)	Reads state DataNode.State information for data node from element.
void	PathwayModel.removeDataNode(DataNode dataNode)	Removes the given dataNode from dataNodes list and elementIdToPathwayObject map.
protected void	PathwayModel.unlinkAlias(Group aliasRef, DataNode alias)	Removes the link between given aliasRef and alias, and removes mapping from aliasRefToAliases of this pathway model.

Method parameters in org.pathvisio.libgpml.model with type arguments of type DataNode

Modifier and Type	Method	Description
protected void	GPML2013aWriter.writeDataNodes(java.util.List<DataNode> dataNodes, org.jdom2.Element root)	Writes datanode DataNode information.
protected void	GPML2021Writer.writeDataNodes(java.util.List<DataNode> dataNodes, org.jdom2.Element root)	Writes datanode DataNode information.
protected void	GPML2013aWriter.writeStates(java.util.List<DataNode> dataNodes, org.jdom2.Element root)	Writes state DataNode.State information.