Uses of Interface
org.pathvisio.libgpml.model.Referenceable.Citable

Packages that use Referenceable.Citable

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of Referenceable.Citable in org.pathvisio.libgpml.model

Classes in org.pathvisio.libgpml.model that implement Referenceable.Citable

Modifier and Type	Class	Description
class	DataNode	This class stores information for a DataNode pathway element.
class	DataNode.State	This class stores all information relevant to a State pathway element.
class	GraphicalLine	This class stores information for GraphicalLine pathway element.
class	Group	This class stores all information relevant to a Group pathway element.
class	Interaction	This class stores information for an Interaction pathway element.
class	Label	This class stores all information relevant to a Label pathway element.
class	LineElement	This abstract class stores information for a Line pathway element, e.g.
class	Pathway	The Pathway class stores information or metadata for a Pathway Model.
class	PathwayElement	Abstract class of pathway elements which are part of a pathway, have an elementId, have Comment, Children: DataNode, State, Interaction, GraphicalLine, Label, Shape, Group.
class	PathwayElement.AnnotationRef	This class stores information for an AnnotationRef with source Annotation, target Referenceable.Annotatable, and a list of PathwayElement.CitationRef and/or PathwayElement.EvidenceRef.
class	Shape	This class stores all information relevant to a Shape pathway element.
class	ShapedElement	This class stores information for shaped pathway element DataNode, DataNode.State, Label, Shape, and Group.

Fields in org.pathvisio.libgpml.model declared as Referenceable.Citable

Modifier and Type	Field	Description
private Referenceable.Citable	PathwayElement.CitationRef.citable

Methods in org.pathvisio.libgpml.model that return Referenceable.Citable

Modifier and Type	Method	Description
Referenceable.Citable	PathwayElement.CitationRef.getCitable()	Returns the target pathway, pathway element, or annotationRef Referenceable.Citable for this citationRef.

Methods in org.pathvisio.libgpml.model with parameters of type Referenceable.Citable

Modifier and Type	Method	Description
protected void	GPML2021Reader.readCitationRefs(PathwayModel pathwayModel, Referenceable.Citable citable, org.jdom2.Element e, java.util.Map<java.lang.String,org.jdom2.Element> refIdToJdomElement)	Reads Citation and PathwayElement.CitationRef information for a Referenceable.Citable.
private void	PathwayElement.CitationRef.setCitable(Referenceable.Citable v)	Sets the target pathway, pathway element, or annotationRef Referenceable.Citable to which the annotationRef belongs.
protected void	PathwayElement.CitationRef.setCitableTo(Referenceable.Citable citable)	Sets the target pathway, pathway element, or annotationRef Referenceable.Citable for this annotationRef.