Package org.pathvisio.libgpml.model

Class Shape

java.lang.Object
org.pathvisio.libgpml.model.PathwayObject
org.pathvisio.libgpml.model.PathwayElement
org.pathvisio.libgpml.model.ShapedElement
org.pathvisio.libgpml.model.Shape
All Implemented Interfaces:
java.lang.Cloneable, Drawable, GraphLink.LinkableTo, Groupable, Referenceable, Referenceable.Annotatable, Referenceable.Citable, Referenceable.Evidenceable
public class Shape
extends ShapedElement
This class stores all information relevant to a Shape pathway element.
Author:
finterly

  • Field Details

    • textLabel

      private java.lang.String textLabel

  • Constructor Details

    • Shape

      public Shape()
      Instantiates a Shape pathway element.

  • Method Details

    • getObjectType

      public ObjectType getObjectType()
      Returns the object type of this pathway element.
      Specified by:
      getObjectType in interface Drawable
      Specified by:
      getObjectType in interface GraphLink.LinkableTo
      Specified by:
      getObjectType in class PathwayObject
      Returns:
      the object type.

    • getTextLabel

      public java.lang.String getTextLabel()
      Returns the text of of the shape.
      Specified by:
      getTextLabel in class ShapedElement
      Returns:
      textLabel the text of of the shape.

    • setTextLabel

      public void setTextLabel​(java.lang.String v)
      Sets the text of this shaped pathway element.
      Specified by:
      setTextLabel in class ShapedElement
      Parameters:
      v - the text to set.

    • terminate

      protected void terminate()
      Terminates this shape and removes all links and references.
      Overrides:
      terminate in class ShapedElement

    • copyValuesFrom

      public void copyValuesFrom​(Shape src)
      Copies values from the given source pathway element.
      Parameters:
      src - the source pathway element.

    • copy

      public CopyElement copy()
      Copies this pathway element.
      Specified by:
      copy in class PathwayElement
      Returns:
      the copyElement for the new pathway element and this source pathway element.

    • getStaticPropertyKeys

      public java.util.Set<StaticProperty> getStaticPropertyKeys()
      Returns all static properties for this pathway object.
      Overrides:
      getStaticPropertyKeys in class ShapedElement
      Returns:
      result the set of static property for this pathway object.

    • getStaticProperty

      public java.lang.Object getStaticProperty​(StaticProperty key)
      Returns static property value for given key.
      Overrides:
      getStaticProperty in class ShapedElement
      Parameters:
      key - the key.
      Returns:
      the static property value.

    • setStaticProperty

      public void setStaticProperty​(StaticProperty key, java.lang.Object value)
      This works so that o.setNotes(x) is the equivalent of o.setProperty("Notes", x); Value may be null in some cases, e.g. graphRef
      Overrides:
      setStaticProperty in class ShapedElement
      Parameters:
      key - the key.
      value - the static property value.