Uses of Class org.pathvisio.libgpml.model.PathwayObject

Packages that use PathwayObject
Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".
org.pathvisio.libgpml.util	Utility classes

Uses of PathwayObject in org.pathvisio.libgpml.model

Subclasses of PathwayObject in org.pathvisio.libgpml.model
Modifier and Type	Class	Description
`class`	`Annotation`	This class stores information for an Annotation.
`class`	`Citation`	This class stores information for a Citation.
`class`	`DataNode`	This class stores information for a DataNode pathway element.
`class`	`DataNode.State`	This class stores all information relevant to a State pathway element.
`class`	`Evidence`	This class stores information for an Evidence.
`class`	`GraphicalLine`	This class stores information for GraphicalLine pathway element.
`class`	`Group`	This class stores all information relevant to a Group pathway element.
`class`	`Interaction`	This class stores information for an Interaction pathway element.
`class`	`Label`	This class stores all information relevant to a Label pathway element.
`class`	`LineElement`	This abstract class stores information for a Line pathway element, e.g.
`class`	`LineElement.Anchor`	This class stores information for an Anchor pathway element.
`class`	`LineElement.GenericPoint`	Abstract class of generic point, extended by `LineElement.LinePoint` and `LineElement.Anchor`.
`class`	`LineElement.LinePoint`	This class stores information for a Point pathway element.
`class`	`Pathway`	The Pathway class stores information or metadata for a Pathway Model.
`class`	`PathwayElement`	Abstract class of pathway elements which are part of a pathway, have an elementId, have Comment, Children: DataNode, State, Interaction, GraphicalLine, Label, Shape, Group.
`class`	`Shape`	This class stores all information relevant to a Shape pathway element.
`class`	`ShapedElement`	This class stores information for shaped pathway element `DataNode`, `DataNode.State`, `Label`, `Shape`, and `Group`.

Fields in org.pathvisio.libgpml.model declared as PathwayObject
Modifier and Type	Field	Description
`private PathwayObject`	PathwayModelEvent.`affectedData`
`private PathwayObject`	PathwayObjectEvent.`pwElement`

Fields in org.pathvisio.libgpml.model with type parameters of type PathwayObject
Modifier and Type	Field	Description
`private java.util.Map<java.lang.String,PathwayObject>`	PathwayModel.`elementIdToPathwayObject`

Methods in org.pathvisio.libgpml.model that return PathwayObject
Modifier and Type	Method	Description
`PathwayObject`	PathwayModelEvent.`getAffectedData()`	Returns the affected data.
`PathwayObject`	PathwayObjectEvent.`getModifiedPathwayObject()`	Gets the PathwayElement whose properties have been modified.
`PathwayObject`	PathwayModel.`getPathwayObject(java.lang.String elementId)`	Returns Pathway Object for the given String elementId key.

Methods in org.pathvisio.libgpml.model that return types with arguments of type PathwayObject
Modifier and Type	Method	Description
`java.util.List<PathwayObject>`	PathwayModel.`getPathwayObjects()`	Returns all pathway objects for the pathway model.

Methods in org.pathvisio.libgpml.model with parameters of type PathwayObject
Modifier and Type	Method	Description
`void`	PathwayModel.`add(PathwayObject o)`	Adds a PathwayObject to this Pathway.
`void`	PathwayModel.`addElementId(java.lang.String elementId, PathwayObject pathwayObject)`	Adds mapping of elementId key to PathwayObject value in the elementIdToPathwayObject hash map.
`protected void`	PathwayModel.`addPathwayObject(PathwayObject o)`	Adds the given pathway object to pathway model.
`protected void`	PathwayModel.`checkMBoardSize(PathwayObject e)`	Checks whether the board size is still large enough for the given `PathwayElement` and increases the size if not
`protected static PathwayObjectEvent`	PathwayObjectEvent.`createAllPropertiesEvent(PathwayObject pathwayObject)`	Creates an all properties event.
`protected static PathwayObjectEvent`	PathwayObjectEvent.`createCoordinatePropertyEvent(PathwayObject pathwayObject)`	Creates a coordinate property event.
`protected static PathwayObjectEvent`	PathwayObjectEvent.`createSinglePropertyEvent(PathwayObject pathwayObject, java.lang.Object property)`	Creates a single property event.
`boolean`	PathwayModel.`hasPathwayObject(PathwayObject pathwayObject)`	Checks if the pathway model has the given pathway object.
`void`	PathwayModel.`remove(PathwayObject o)`	Removes a PathwayObject from this Pathway.
`protected void`	PathwayModel.`removePathwayObject(PathwayObject o)`	Removes the given pathway object from pathway model and elementIdToPathwayObject map.

Constructors in org.pathvisio.libgpml.model with parameters of type PathwayObject
Constructor	Description
`PathwayModelEvent(PathwayObject pathwayObject, int t)`	Instantiates a pathway model event.
`PathwayObjectEvent(PathwayObject elem, java.lang.Object prop, boolean coordinateChange)`	Constructor.

Uses of PathwayObject in org.pathvisio.libgpml.util

Methods in org.pathvisio.libgpml.util with parameters of type PathwayObject
Modifier and Type	Method	Description
`static java.lang.String`	Utils.`summary(PathwayObject elt)`	Returns string summary information for a pathway object.
`private static void`	Utils.`summaryHelper(PathwayObject elt, java.lang.StringBuilder result, StaticProperty p, java.lang.String shortHand)`	append a property to the summary