Uses of Class
org.pathvisio.libgpml.model.Pathway

Packages that use Pathway

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of Pathway in org.pathvisio.libgpml.model

Fields in org.pathvisio.libgpml.model declared as Pathway

Modifier and Type	Field	Description
private Pathway	PathwayModel.pathway

Methods in org.pathvisio.libgpml.model that return Pathway

Modifier and Type	Method	Description
Pathway	PathwayModel.getPathway()	Returns the pathway object containing metadata, e.g.
protected Pathway	GPML2013aReader.readPathway(Pathway pathway, org.jdom2.Element root)	Reads pathway information from root element.
protected Pathway	GPML2021Reader.readPathway(Pathway pathway, org.jdom2.Element root)	Reads pathway information from jdom root element.

Methods in org.pathvisio.libgpml.model with parameters of type Pathway

Modifier and Type	Method	Description
void	Pathway.copyValuesFrom(Pathway src)	Note: doesn't change parent, only fields Used by UndoAction.
protected void	GPML2021Reader.readAuthors(Pathway pathway, org.jdom2.Element root)	Reads author Pathway.Author information for pathway from root element.
protected void	GPML2013aReader.readInfoBox(Pathway pathway, org.jdom2.Element root)	Reads the infobox x and y coordinate information.
protected void	GPML2013aReader.readLegend(Pathway pathway, org.jdom2.Element root)	Reads the Legend CenterX and CenterY to pathway dynamic properties PathwayElement.setDynamicProperty(java.lang.String, java.lang.String) .
protected Pathway	GPML2013aReader.readPathway(Pathway pathway, org.jdom2.Element root)	Reads pathway information from root element.
protected Pathway	GPML2021Reader.readPathway(Pathway pathway, org.jdom2.Element root)	Reads pathway information from jdom root element.
private void	PathwayModel.removeOldPathway(Pathway oldP)	Removes old pathway prior to PathwayModel.setNewPathway(org.pathvisio.libgpml.model.Pathway), both called by PathwayModel.replacePathway(org.pathvisio.libgpml.model.Pathway).
protected void	PathwayModel.replacePathway(Pathway newP)	Replaces the Pathway, calls PathwayModel.removeOldPathway(org.pathvisio.libgpml.model.Pathway) and then PathwayModel.setNewPathway(org.pathvisio.libgpml.model.Pathway).
private void	PathwayModel.setNewPathway(Pathway newP)	Sets new pathway after to PathwayModel.removeOldPathway(org.pathvisio.libgpml.model.Pathway), both called by PathwayModel.replacePathway(org.pathvisio.libgpml.model.Pathway).
protected void	GPML2013aWriter.writeInfoBox(Pathway pathway, org.jdom2.Element root)	Writes the infobox x and y coordinate information.
protected void	GPML2013aWriter.writeLegend(Pathway pathway, org.jdom2.Element root)	Writes the legend x and y coordinate information.
protected void	GPML2013aWriter.writePathwayDynamicProperties(Pathway pathway, org.jdom2.Element root)	Writes dynamic property information for pathway or pathway element.