Uses of Interface
org.pathvisio.libgpml.model.Referenceable.Evidenceable

Packages that use Referenceable.Evidenceable

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of Referenceable.Evidenceable in org.pathvisio.libgpml.model

Classes in org.pathvisio.libgpml.model that implement Referenceable.Evidenceable

Modifier and Type	Class	Description
class	DataNode	This class stores information for a DataNode pathway element.
class	DataNode.State	This class stores all information relevant to a State pathway element.
class	GraphicalLine	This class stores information for GraphicalLine pathway element.
class	Group	This class stores all information relevant to a Group pathway element.
class	Interaction	This class stores information for an Interaction pathway element.
class	Label	This class stores all information relevant to a Label pathway element.
class	LineElement	This abstract class stores information for a Line pathway element, e.g.
class	Pathway	The Pathway class stores information or metadata for a Pathway Model.
class	PathwayElement	Abstract class of pathway elements which are part of a pathway, have an elementId, have Comment, Children: DataNode, State, Interaction, GraphicalLine, Label, Shape, Group.
class	PathwayElement.AnnotationRef	This class stores information for an AnnotationRef with source Annotation, target Referenceable.Annotatable, and a list of PathwayElement.CitationRef and/or PathwayElement.EvidenceRef.
class	Shape	This class stores all information relevant to a Shape pathway element.
class	ShapedElement	This class stores information for shaped pathway element DataNode, DataNode.State, Label, Shape, and Group.

Fields in org.pathvisio.libgpml.model declared as Referenceable.Evidenceable

Modifier and Type	Field	Description
private Referenceable.Evidenceable	PathwayElement.EvidenceRef.evidenceable

Methods in org.pathvisio.libgpml.model that return Referenceable.Evidenceable

Modifier and Type	Method	Description
Referenceable.Evidenceable	PathwayElement.EvidenceRef.getEvidenceable()	Returns the target pathway, pathway element, or evidenceRef Referenceable.Evidenceable for this evidenceRef.

Methods in org.pathvisio.libgpml.model with parameters of type Referenceable.Evidenceable

Modifier and Type	Method	Description
protected void	GPML2021Reader.readEvidenceRefs(PathwayModel pathwayModel, Referenceable.Evidenceable evidenceable, org.jdom2.Element e, java.util.Map<java.lang.String,org.jdom2.Element> refIdToJdomElement)	Reads Evidence and PathwayElement.EvidenceRef information for an Referenceable.Evidenceable.
private void	PathwayElement.EvidenceRef.setEvidenceable(Referenceable.Evidenceable v)	Sets the target pathway, pathway element, or evidenceRef Referenceable.Evidenceable to which the evidenceRef belongs.
protected void	PathwayElement.EvidenceRef.setEvidenceableTo(Referenceable.Evidenceable evidenceable)	Sets the target pathway, pathway element, or evidenceRef Referenceable.Evidenceable for this evidenceRef.