Uses of Class
org.pathvisio.libgpml.model.ShapedElement

Packages that use ShapedElement

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of ShapedElement in org.pathvisio.libgpml.model

Subclasses of ShapedElement in org.pathvisio.libgpml.model

Modifier and Type	Class	Description
class	DataNode	This class stores information for a DataNode pathway element.
class	DataNode.State	This class stores all information relevant to a State pathway element.
class	Group	This class stores all information relevant to a Group pathway element.
class	Label	This class stores all information relevant to a Label pathway element.
class	Shape	This class stores all information relevant to a Shape pathway element.

Methods in org.pathvisio.libgpml.model that return types with arguments of type ShapedElement

Modifier and Type	Method	Description
java.util.List<ShapedElement>	PathwayModel.getShapedElements()	Returns all shaped pathway elements for the pathway model (dataNodes, states, labels, shapes, and groups).
java.util.List<ShapedElement>	PathwayModel.getShapedElementsExclStates()	Returns all shaped pathway elements for the pathway model (dataNodes, labels, shapes, and groups).

Methods in org.pathvisio.libgpml.model with parameters of type ShapedElement

Modifier and Type	Method	Description
void	ShapedElement.copyValuesFrom(ShapedElement src)	Copies values from the given source pathway element.
protected void	GPML2013aReader.readFontProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Reads font property information.
protected void	GPML2021Reader.readFontProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Reads font property information.
protected void	GPML2013aReader.readGroupRef(ShapedElement shapedElement, org.jdom2.Element se, java.util.Map<java.lang.String,Group> groupIdToGroup)	Reads and sets groupRef for given (shaped) pathway element and jdom Element.
protected void	GPML2021Reader.readGroupRef(PathwayModel pathwayModel, ShapedElement shapedElement, org.jdom2.Element e)	Reads groupRef information for DataNode, Label, and Shape.
protected void	GPML2013aReader.readRectProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Reads rect property information.
protected void	GPML2021Reader.readRectProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Reads rect property information.
protected void	GPML2013aReader.readShapedElement(ShapedElement shapedElement, org.jdom2.Element se, java.util.Map<java.lang.String,GPML2013aReader.PublicationXref> idToPublicationXref)	Reads shaped pathway element ShapedElement information: graphics and comment group (comments, biopaxRefs (equivalent to citationRefs), and dynamic properties).
protected void	GPML2021Reader.readShapedElement(PathwayModel pathwayModel, ShapedElement shapedElement, org.jdom2.Element se, java.util.Map<java.lang.String,org.jdom2.Element> refIdToJdomElement)	Reads common properties for shaped pathway elements ShapedElement.
protected void	GPML2013aReader.readShapeStyleProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Reads shape style property information.
protected void	GPML2021Reader.readShapeStyleProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Reads shape style property information.
protected void	GPML2013aWriter.writeColor(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes color property information for shaped pathway elements.
protected void	GPML2013aWriter.writeFontProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes font property information, except color.
protected void	GPML2021Writer.writeFontProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes font property information.
protected void	GPML2013aWriter.writeRectProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes rect property information.
protected void	GPML2021Writer.writeRectProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes rect property information.
protected void	GPML2013aWriter.writeShapedElement(ShapedElement shapedElement, org.jdom2.Element se)	Writes shapedElement ShapedElement information for datanodes, labels, shapes, or groups.
protected void	GPML2021Writer.writeShapedElement(ShapedElement shapedElement, org.jdom2.Element se)	Writes shapedElement ShapedElement information for datanodes, labels, shapes, or groups.
protected void	GPML2013aWriter.writeShapedOrStateDynamicProperties(java.util.Map<java.lang.String,java.lang.String> dynamicProperties, ShapedElement shapedElement, org.jdom2.Element se)	Writes dynamic property information for ShapedElement or DataNode.State pathway element.
protected void	GPML2013aWriter.writeShapeStyleProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes shape style property information, except borderColor, zOrder, and fillColor.
protected void	GPML2021Writer.writeShapeStyleProperty(ShapedElement shapedElement, org.jdom2.Element gfx)	Writes shape style property information.