Uses of Interface
org.pathvisio.libgpml.model.Referenceable.Annotatable

Packages that use Referenceable.Annotatable

Package	Description
org.pathvisio.libgpml.model	Classes representing the pathway "model".

Uses of Referenceable.Annotatable in org.pathvisio.libgpml.model

Classes in org.pathvisio.libgpml.model that implement Referenceable.Annotatable

Modifier and Type	Class	Description
class	DataNode	This class stores information for a DataNode pathway element.
class	DataNode.State	This class stores all information relevant to a State pathway element.
class	GraphicalLine	This class stores information for GraphicalLine pathway element.
class	Group	This class stores all information relevant to a Group pathway element.
class	Interaction	This class stores information for an Interaction pathway element.
class	Label	This class stores all information relevant to a Label pathway element.
class	LineElement	This abstract class stores information for a Line pathway element, e.g.
class	Pathway	The Pathway class stores information or metadata for a Pathway Model.
class	PathwayElement	Abstract class of pathway elements which are part of a pathway, have an elementId, have Comment, Children: DataNode, State, Interaction, GraphicalLine, Label, Shape, Group.
class	PathwayElement.CitationRef	This class stores information for a CitationRef with source Citation, target Referenceable.Citable, and a list of PathwayElement.AnnotationRef.
class	Shape	This class stores all information relevant to a Shape pathway element.
class	ShapedElement	This class stores information for shaped pathway element DataNode, DataNode.State, Label, Shape, and Group.

Fields in org.pathvisio.libgpml.model declared as Referenceable.Annotatable

Modifier and Type	Field	Description
private Referenceable.Annotatable	PathwayElement.AnnotationRef.annotatable

Methods in org.pathvisio.libgpml.model that return Referenceable.Annotatable

Modifier and Type	Method	Description
Referenceable.Annotatable	PathwayElement.AnnotationRef.getAnnotatable()	Returns the target pathway, pathway element, or citationRef Referenceable.Annotatable for this annotationRef.

Methods in org.pathvisio.libgpml.model with parameters of type Referenceable.Annotatable

Modifier and Type	Method	Description
protected void	GPML2021Reader.readAnnotationRefs(PathwayModel pathwayModel, Referenceable.Annotatable annotatable, org.jdom2.Element e, java.util.Map<java.lang.String,org.jdom2.Element> refIdToJdomElement)	Reads Annotation and PathwayElement.AnnotationRef information for an Referenceable.Annotatable.
private void	PathwayElement.AnnotationRef.setAnnotatable(Referenceable.Annotatable v)	Sets the target pathway, pathway element, or citationRef Referenceable.Annotatable for this annotationRef.
protected void	PathwayElement.AnnotationRef.setAnnotatableTo(Referenceable.Annotatable annotatable)	Sets the target pathway element or citationRef Referenceable.Annotatable for this annotationRef.