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H
- hAlign - Variable in class org.pathvisio.libgpml.model.ShapedElement
- HALIGN - org.pathvisio.libgpml.prop.StaticProperty
- HALIGN_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
- HAlignType - Enum in org.pathvisio.libgpml.model.type
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This enum class contains possible values for horizontal text alignment property.
- HAlignType(String) - Constructor for enum org.pathvisio.libgpml.model.type.HAlignType
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Constructor to initialize the state of enum types.
- HALIGNTYPE - org.pathvisio.libgpml.prop.StaticPropertyType
- hasAliasRef(Group) - Method in class org.pathvisio.libgpml.model.PathwayModel
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Returns true if pathway model has Group aliasRef.
- hasAnchor(LineElement.Anchor) - Method in class org.pathvisio.libgpml.model.LineElement
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Checks whether anchors has the given anchor.
- hasAnnotatable() - Method in class org.pathvisio.libgpml.model.PathwayElement.AnnotationRef
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Checks whether this annotationRef has a target annotatable.
- hasAnnotation() - Method in class org.pathvisio.libgpml.model.PathwayElement.AnnotationRef
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Checks whether this annotationRef has a source annotation.
- hasAnnotationRef(PathwayElement.AnnotationRef) - Method in class org.pathvisio.libgpml.model.Annotation
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Check whether annotationRefs has the given annotationRef.
- hasAnnotationRef(PathwayElement.AnnotationRef) - Method in class org.pathvisio.libgpml.model.PathwayElement.CitationRef
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Checks whether annotationRefs has the given annotationRef.
- hasAnnotationRef(PathwayElement.AnnotationRef) - Method in class org.pathvisio.libgpml.model.PathwayElement
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Checks whether annotationRefs has the given annotationRef.
- hasAnnotationRef(PathwayElement.AnnotationRef) - Method in interface org.pathvisio.libgpml.model.Referenceable.Annotatable
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Check whether this annotatable has the given annotationRef.
- hasChanged() - Method in class org.pathvisio.libgpml.model.PathwayModel
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The "changed" flag tracks if the Pathway has been changed since the file was opened or last saved.
- hasCitable() - Method in class org.pathvisio.libgpml.model.PathwayElement.CitationRef
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Checks whether this citationRef has a target citable.
- hasCitation() - Method in class org.pathvisio.libgpml.model.PathwayElement.CitationRef
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Checks whether this citationRef has a source citation.
- hasCitationRef(PathwayElement.CitationRef) - Method in class org.pathvisio.libgpml.model.Citation
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Check whether citationRefs has the given citationRef.
- hasCitationRef(PathwayElement.CitationRef) - Method in class org.pathvisio.libgpml.model.PathwayElement.AnnotationRef
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Checks whether citationRefs has the given citationRef.
- hasCitationRef(PathwayElement.CitationRef) - Method in class org.pathvisio.libgpml.model.PathwayElement
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Checks whether citationRefs has the given citationRef.
- hasCitationRef(PathwayElement.CitationRef) - Method in interface org.pathvisio.libgpml.model.Referenceable.Citable
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Check whether this citable has the given citationRef.
- hasEqualAnnotation(Annotation) - Method in class org.pathvisio.libgpml.model.PathwayModel
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Checks if given annotation already exists for the pathway model.
- hasEqualCitation(Citation) - Method in class org.pathvisio.libgpml.model.PathwayModel
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Checks if given citation already exists for the pathway model.
- hasEqualEvidence(Evidence) - Method in class org.pathvisio.libgpml.model.PathwayModel
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Checks if given evidence already exists for the pathway model.
- hasEvidence() - Method in class org.pathvisio.libgpml.model.PathwayElement.EvidenceRef
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Checks whether this evidenceRef has a source evidence.
- hasEvidenceable() - Method in class org.pathvisio.libgpml.model.PathwayElement.EvidenceRef
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Checks whether this evidenceRef has a target evidenceable.
- hasEvidenceRef(PathwayElement.EvidenceRef) - Method in class org.pathvisio.libgpml.model.Evidence
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Check whether evidenceRefs has the given evidenceRef.
- hasEvidenceRef(PathwayElement.EvidenceRef) - Method in class org.pathvisio.libgpml.model.PathwayElement.AnnotationRef
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Checks whether citationRefs has the given citationRef.
- hasEvidenceRef(PathwayElement.EvidenceRef) - Method in class org.pathvisio.libgpml.model.PathwayElement
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Checks whether evidenceRefs has the given evidenceRef.
- hasEvidenceRef(PathwayElement.EvidenceRef) - Method in interface org.pathvisio.libgpml.model.Referenceable.Evidenceable
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Check whether this annotatable has the given evidenceRef.
- hasGroupRef() - Method in interface org.pathvisio.libgpml.model.Groupable
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Checks whether this pathway element belongs to a group.
- hasGroupRef() - Method in class org.pathvisio.libgpml.model.LineElement
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Checks whether this pathway element belongs to a group.
- hasGroupRef() - Method in class org.pathvisio.libgpml.model.ShapedElement
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Checks whether this pathway element belongs to a group.
- hasLinkedAlias(Group, DataNode) - Method in class org.pathvisio.libgpml.model.PathwayModel
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Returns true if pathway model has DataNode alias and Group aliasRef.
- hasNext() - Method in class org.pathvisio.libgpml.debug.DebugList.DebugIterator
- hasPathwayElement(Groupable) - Method in class org.pathvisio.libgpml.model.Group
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Checks whether pathwayElements has the given pathwayElement.
- hasPathwayModel() - Method in class org.pathvisio.libgpml.model.PathwayObject
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Checks whether this pathway element belongs to a pathway model.
- hasPathwayObject(PathwayObject) - Method in class org.pathvisio.libgpml.model.PathwayModel
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Checks if the pathway model has the given pathway object.
- hasPrevious() - Method in class org.pathvisio.libgpml.debug.DebugList.DebugIterator
- hasRef - Variable in class org.pathvisio.libgpml.model.GPML2013aReader.PublicationXref
- hasState(DataNode.State) - Method in class org.pathvisio.libgpml.model.DataNode
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Checks whether states has the given state.
- hasValidWaypoints(ConnectorRestrictions) - Method in interface org.pathvisio.libgpml.model.connector.ConnectorShape
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Checks whether the waypoints as provided by the ConnectorRestrictions are valid and will be used to draw the connector path
- hasValidWaypoints(ConnectorRestrictions) - Method in class org.pathvisio.libgpml.model.connector.ElbowConnectorShape
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Checks if number of waypoints matches number of segments.
- hasValidWaypoints(ConnectorRestrictions) - Method in class org.pathvisio.libgpml.model.connector.FreeConnectorShape
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Checks if number of waypoints matches number of segments.
- hasValidWaypoints(ConnectorRestrictions) - Method in class org.pathvisio.libgpml.model.connector.StraightConnectorShape
- height - Variable in class org.pathvisio.libgpml.model.ShapedElement
- HEIGHT - org.pathvisio.libgpml.prop.StaticProperty
- helper() - Static method in class org.pathvisio.libgpml.debug.DebugList
- HEXAGON - Static variable in class org.pathvisio.libgpml.model.type.ShapeType
- hexToColor(String) - Static method in class org.pathvisio.libgpml.util.ColorUtils
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Converts a hexBinary string to
Color(r,g,b) or (r,g,b,a). - hidden - Variable in enum org.pathvisio.libgpml.prop.StaticProperty
- href - Variable in class org.pathvisio.libgpml.model.Label
- HREF - org.pathvisio.libgpml.prop.StaticProperty
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