O-Index

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O

o - Variable in class org.pathvisio.libgpml.model.Test
o1 - Variable in class org.pathvisio.libgpml.model.TestCopy
ObjectType - Enum in org.pathvisio.libgpml.model.type: Possible values for PathwayElement.getObjectType(), such as "DataNode" or "Shape"
ObjectType(String) - Constructor for enum org.pathvisio.libgpml.model.type.ObjectType: Private constructor for object type.
OCTAGON - org.pathvisio.libgpml.model.shape.ShapeCatalog.Internal
OCTAGON - Static variable in class org.pathvisio.libgpml.model.type.ShapeType
OCV_ONTOLOGY_MAP - Static variable in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract: This BidiMap maps GPML2013a openControlledVocabulary Ontology types to their DataSource Prefix for reading GPML2013aReader.readOpenControlledVocabulary(org.pathvisio.libgpml.model.PathwayModel, org.jdom2.Element, java.util.Set<java.lang.String>) and writing GPML2013aWriter.writeOpenControlledVocabulary(org.pathvisio.libgpml.model.PathwayModel, org.jdom2.Element).
oneOf(Set<T>) - Static method in class org.pathvisio.libgpml.util.Utils: Useful if you want to use one item from a set, and you don't care which one.
ONTOLOGY - Static variable in class org.pathvisio.libgpml.model.type.AnnotationType
OPEN - org.pathvisio.libgpml.model.shape.ArrowShape.FillType: Open fill-type, where the outline is colored with the foreground color and the body is colored with the canvas color.
order - Variable in class org.pathvisio.libgpml.model.Pathway.Author
order - Variable in enum org.pathvisio.libgpml.prop.StaticProperty
org.pathvisio.libgpml.debug - package org.pathvisio.libgpml.debug: Debugging and logging utility classes
org.pathvisio.libgpml.io - package org.pathvisio.libgpml.io: Import and export classes
org.pathvisio.libgpml.model - package org.pathvisio.libgpml.model: Classes representing the pathway "model".
org.pathvisio.libgpml.model.connector - package org.pathvisio.libgpml.model.connector: Line connectors classes
org.pathvisio.libgpml.model.shape - package org.pathvisio.libgpml.model.shape: Shape defining classes
org.pathvisio.libgpml.model.type - package org.pathvisio.libgpml.model.type: Enum type classes
org.pathvisio.libgpml.prop - package org.pathvisio.libgpml.prop: Properties classes
org.pathvisio.libgpml.util - package org.pathvisio.libgpml.util: Utility classes
ORGAN - Static variable in class org.pathvisio.libgpml.model.type.DataNodeType
ORGANELLE - Static variable in class org.pathvisio.libgpml.model.type.ShapeType
organism - Variable in class org.pathvisio.libgpml.model.Pathway
ORGANISM - org.pathvisio.libgpml.prop.StaticProperty
ORGANISM - org.pathvisio.libgpml.prop.StaticPropertyType
OS_LINUX - Static variable in class org.pathvisio.libgpml.util.Utils
OS_MAC - Static variable in class org.pathvisio.libgpml.util.Utils
OS_UNSUPPORTED - Static variable in class org.pathvisio.libgpml.util.Utils
OS_WINDOWS - Static variable in class org.pathvisio.libgpml.util.Utils
OVAL - Static variable in class org.pathvisio.libgpml.model.type.ShapeType
OWL_NAMESPACE - Static variable in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
OWL_NAMESPACE - Static variable in class org.pathvisio.libgpml.model.GPMLFormatAbstract

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