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M

makeTransparent(Color, int) - Static method in class org.pathvisio.libgpml.util.ColorUtils

Returns a new transparent color for given color with given alpha.

mapFileTree(File, File, File) - Static method in class org.pathvisio.libgpml.util.FileUtils

Maps a file from one point in the directory tree to another point.

markChanged() - Method in class org.pathvisio.libgpml.model.PathwayModel

To be called after each edit operation

mayCross(Point2D) - Method in interface org.pathvisio.libgpml.model.connector.ConnectorRestrictions

Checks if the connector may cross this point Optionally, returns a shape that defines the boundaries of the area around this point that the connector may not cross.

mayCross(Point2D) - Method in class org.pathvisio.libgpml.model.LineElement

Check if the connector may cross this point Optionally, returns a shape that defines the boundaries of the area around this point that the connector may not cross.

MEMBRANE_ICON - org.pathvisio.libgpml.model.shape.ShapeCatalog.Internal

MEMBRANE_ICON - Static variable in class org.pathvisio.libgpml.model.type.ShapeType

METABOLITE - Static variable in class org.pathvisio.libgpml.model.type.DataNodeType

MIDDLE - org.pathvisio.libgpml.model.type.VAlignType

MITOCHONDRIA - org.pathvisio.libgpml.model.shape.ShapeCatalog.Internal

MITOCHONDRIA - Static variable in class org.pathvisio.libgpml.model.type.ShapeType

modCount - Variable in class org.pathvisio.libgpml.debug.DebugList

moveBy(double, double) - Method in class org.pathvisio.libgpml.model.LineElement.LinePoint

Moves x and y coordinates for this line point by the given values.

moveTo(double, double) - Method in class org.pathvisio.libgpml.model.LineElement.LinePoint

Moves x and y coordinates for this line point to given values.

moveTo(LineElement.LinePoint) - Method in class org.pathvisio.libgpml.model.LineElement.LinePoint

Moves the xy and relXY coordinates for this line point to the coordinate values of the given line point.

multimapPut(Map<U, Set<V>>, U, V) - Static method in class org.pathvisio.libgpml.util.Utils

For safely adding a value to a multimap (i.e.

multimapValues(Map<U, Set<V>>) - Static method in class org.pathvisio.libgpml.util.Utils

Returns a set of all unique values of a multimap (i.e.

multiply(double) - Method in class org.pathvisio.libgpml.util.LinAlg.Point

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