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F

fatal(String) - Method in class org.pathvisio.libgpml.debug.Logger
 
fatalEnabled - Variable in class org.pathvisio.libgpml.debug.Logger
 
FileUtils - Class in org.pathvisio.libgpml.util
Collection of static utility methods dealing with files.
FileUtils() - Constructor for class org.pathvisio.libgpml.util.FileUtils
 
fillColor - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FILLCOLOR - org.pathvisio.libgpml.prop.StaticProperty
 
FILLCOLOR_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
fillType - Variable in class org.pathvisio.libgpml.model.shape.ArrowShape
 
FillType() - Constructor for enum org.pathvisio.libgpml.model.shape.ArrowShape.FillType
 
findAnchorSegment(LineElement, double) - Method in class org.pathvisio.libgpml.model.LineElement
 
findComment(String) - Method in class org.pathvisio.libgpml.model.PathwayElement
Finds the first comment with a specific source.
fireObjectModifiedEvent(PathwayModelEvent) - Method in class org.pathvisio.libgpml.model.PathwayModel
Firing the ObjectModifiedEvent has the side effect of marking the Pathway as changed.
fireObjectModifiedEvent(PathwayObjectEvent) - Method in class org.pathvisio.libgpml.model.PathwayObject
Fires object modified event.
fireStatusFlagEvent(PathwayModel.StatusFlagEvent) - Method in class org.pathvisio.libgpml.model.PathwayModel
Fires status flag event.
fontDecoration - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FONTDECORATION - org.pathvisio.libgpml.prop.StaticProperty
 
FONTDECORATION_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
fontName - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FONTNAME - org.pathvisio.libgpml.prop.StaticProperty
 
FONTNAME - org.pathvisio.libgpml.prop.StaticPropertyType
 
FONTNAME_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
fontSize - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FONTSIZE - org.pathvisio.libgpml.prop.StaticProperty
 
FONTSIZE_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
fontStrikethru - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FONTSTRIKETHRU - org.pathvisio.libgpml.prop.StaticProperty
 
FONTSTRIKETHRU_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
fontStyle - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FONTSTYLE - org.pathvisio.libgpml.prop.StaticProperty
 
FONTSTYLE_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
fontWeight - Variable in class org.pathvisio.libgpml.model.ShapedElement
 
FONTWEIGHT - org.pathvisio.libgpml.prop.StaticProperty
 
FONTWEIGHT_DEFAULT - Static variable in class org.pathvisio.libgpml.model.GPML2021FormatAbstract
 
FORMAT_STRING - Static variable in class org.pathvisio.libgpml.debug.Logger
 
formatExceptionMsg(String) - Static method in class org.pathvisio.libgpml.util.Utils
Formats a message that will be displayed in a dialog, so it's not longer than 80 symbols in each line
FreeConnectorShape - Class in org.pathvisio.libgpml.model.connector
Implements a connector that draws straight lines between multiple waypoints.
FreeConnectorShape() - Constructor for class org.pathvisio.libgpml.model.connector.FreeConnectorShape
Constructor for free connector shape.
fromCamelCase(String) - Method in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
Converts shapeType String from UpperCamelCase convention back to its original appearance in GPML2013a.
fromLineCoordinate(double) - Method in interface org.pathvisio.libgpml.model.connector.ConnectorShape
Translates a 1-dimensional line coordinate to a 2-dimensional view coordinate.
fromLineCoordinate(double) - Method in class org.pathvisio.libgpml.model.connector.CurvedConnectorShape
 
fromLineCoordinate(double) - Method in class org.pathvisio.libgpml.model.connector.SegmentedConnector
Translates a 1-dimensional line coordinate to a 2-dimensional view coordinate.
fromLineCoordinate(double) - Method in class org.pathvisio.libgpml.model.connector.StraightConnectorShape
Translates a 1-dimensional line coordinate to a 2-dimensional view coordinate.
fromLineCoordinate(double, ConnectorShape.Segment[]) - Method in class org.pathvisio.libgpml.model.connector.SegmentedConnector
 
fromName(String) - Static method in class org.pathvisio.libgpml.model.shape.ShapeRegistry
Returns ShapeType corresponding to given name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.AnchorShapeType
Returns the AnchorType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.AnnotationType
Returns the AnnotationType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.ArrowHeadType
Returns the ArrowHeadType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.ConnectorType
Returns the ConnectorType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.DataNodeType
Returns the DataNodeType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.GroupType
Looks up the ConnectorType corresponding to that name.
fromName(String) - Static method in enum org.pathvisio.libgpml.model.type.HAlignType
Returns HAlignType enum constant from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.LineStyleType
Returns the LineStyleType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.ShapeType
Returns the ShapeType from given string name.
fromName(String) - Static method in class org.pathvisio.libgpml.model.type.StateType
Returns the StateType from given string name.
fromName(String) - Static method in enum org.pathvisio.libgpml.model.type.VAlignType
Returns VAlignType enum constant from given string name.
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