Index
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I
- i - Variable in class org.pathvisio.libgpml.model.TestGraphLink
- i1 - Variable in class org.pathvisio.libgpml.model.TestAnchor
- i1 - Variable in class org.pathvisio.libgpml.model.TestCopy
- i1 - Variable in class org.pathvisio.libgpml.model.TestLinePoint
- i2 - Variable in class org.pathvisio.libgpml.model.TestGraphLink
- IA_PANEL_MAP - Static variable in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
-
This
Mapmaps new Interaction Panel arrow head types to the definedListfor corresponding GPML2013a arrowHead types. - id - Variable in enum org.pathvisio.libgpml.prop.StaticPropertyType
- indexOf(Object) - Method in class org.pathvisio.libgpml.debug.DebugList
- info(String) - Method in class org.pathvisio.libgpml.debug.Logger
- INFOBOX_CENTER_X - Static variable in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
- INFOBOX_CENTER_Y - Static variable in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
- infoEnabled - Variable in class org.pathvisio.libgpml.debug.Logger
- InfoRef() - Constructor for class org.pathvisio.libgpml.model.PathwayElement.InfoRef
- INHIBITION - Static variable in class org.pathvisio.libgpml.model.type.ArrowHeadType
- INHIBITION_LIST - Static variable in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
- initAttributeInfo() - Static method in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
- initTagMapping() - Static method in enum org.pathvisio.libgpml.prop.StaticProperty
- inputStreamToReader(InputStream) - Static method in class org.pathvisio.libgpml.util.RootElementFinder
-
Special reader that works around problem with UTF-BOM
- INTEGER - org.pathvisio.libgpml.prop.StaticPropertyType
- Interaction - Class in org.pathvisio.libgpml.model
-
This class stores information for an Interaction pathway element.
- Interaction() - Constructor for class org.pathvisio.libgpml.model.Interaction
-
Instantiates an Interaction pathway element given all required parameters except xref.
- Interaction(Xref) - Constructor for class org.pathvisio.libgpml.model.Interaction
-
Instantiates an Interaction pathway element given all possible parameters.
- INTERACTION - org.pathvisio.libgpml.model.type.ObjectType
-
A connector pathway element which represents biological relation between entities.
- interactions - Variable in class org.pathvisio.libgpml.model.PathwayModel
- Internal() - Constructor for enum org.pathvisio.libgpml.model.shape.ShapeCatalog.Internal
- isAdvanced - Variable in enum org.pathvisio.libgpml.prop.StaticProperty
- isAdvanced() - Method in enum org.pathvisio.libgpml.prop.StaticProperty
- isCollection() - Method in interface org.pathvisio.libgpml.prop.Property
-
Gets whether this property has accepts values.
- isCollection() - Method in enum org.pathvisio.libgpml.prop.StaticProperty
- isCoordinate - Variable in enum org.pathvisio.libgpml.prop.StaticProperty
- isCoordinateChange() - Method in class org.pathvisio.libgpml.model.PathwayObjectEvent
-
Returns true if this event was caused by a coordinate change (e.g.
- isCoordinateChange() - Method in enum org.pathvisio.libgpml.prop.StaticProperty
- isCorrectType(File) - Method in class org.pathvisio.libgpml.io.AbstractPathwayModelFormat
- isCorrectType(File) - Method in interface org.pathvisio.libgpml.io.PathwayModelImporter
-
Inspects the file and determine if the file is suitable for import using this importer.
- isCorrectType(File) - Method in class org.pathvisio.libgpml.model.GPMLFormat
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Returns true if file type is correct.
- isDisallowLinks() - Method in class org.pathvisio.libgpml.model.type.AnchorShapeType
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Returns the booleans disallowLinks.
- isEmpty() - Method in class org.pathvisio.libgpml.debug.DebugList
- isEmpty(String) - Static method in class org.pathvisio.libgpml.util.Utils
-
Returns true if string is empty or null.
- isEqualsColor(String, String) - Method in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
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Returns true if given value and default value are the same color object.
- isEqualsNumber(String, String) - Method in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
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Returns true if given string value and default value are numerically equal.
- isEqualsString(String, String) - Method in class org.pathvisio.libgpml.model.GPML2013aFormatAbstract
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Returns true if given string value and default value are equal.
- IShape - Interface in org.pathvisio.libgpml.model.shape
-
Interface for shapes.
- isHidden() - Method in enum org.pathvisio.libgpml.prop.StaticProperty
- isPointOnSegment(Double, Double, Double) - Method in class org.pathvisio.libgpml.model.connector.ElbowConnectorShape
- isRelative() - Method in class org.pathvisio.libgpml.model.LineElement.LinePoint
-
Checks if the position of this point should be stored as relative or absolute coordinates.
- isResizeable - Variable in class org.pathvisio.libgpml.model.shape.AbstractShape
- isResizeable - Variable in class org.pathvisio.libgpml.model.type.ShapeType
- isResizeable() - Method in class org.pathvisio.libgpml.model.shape.AbstractShape
-
Returns boolean for whether shape is resizeable.
- isResizeable() - Method in interface org.pathvisio.libgpml.model.shape.IShape
- isResizeable() - Method in class org.pathvisio.libgpml.model.type.ShapeType
-
Returns boolean for whether shape is resizeable.
- isRotatable - Variable in class org.pathvisio.libgpml.model.shape.AbstractShape
- isRotatable - Variable in class org.pathvisio.libgpml.model.type.ShapeType
- isRotatable() - Method in class org.pathvisio.libgpml.model.shape.AbstractShape
-
Returns boolean for whether shape is rotatable.
- isRotatable() - Method in interface org.pathvisio.libgpml.model.shape.IShape
- isRotatable() - Method in class org.pathvisio.libgpml.model.type.ShapeType
-
Returns boolean for whether shape is rotatable.
- isTransparent(Color) - Static method in class org.pathvisio.libgpml.util.ColorUtils
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Returns true if fill color is equal to null or the alpha value is equal to 0.
- iterator() - Method in class org.pathvisio.libgpml.debug.DebugList
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