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E

e1 - Variable in class org.pathvisio.libgpml.model.TestReferenceable

EDGE - Static variable in class org.pathvisio.libgpml.model.type.ShapeType

ELBOW - Static variable in class org.pathvisio.libgpml.model.type.ConnectorType

ElbowConnectorShape - Class in org.pathvisio.libgpml.model.connector

ConnectorShape implementation for the elbow connector.

ElbowConnectorShape() - Constructor for class org.pathvisio.libgpml.model.connector.ElbowConnectorShape

elbowSegments - Variable in class org.pathvisio.libgpml.model.connector.CurvedConnectorShape

element - Variable in class org.pathvisio.libgpml.model.GPML2013aReader.PublicationXref

elementId - Variable in class org.pathvisio.libgpml.model.GPML2013aReader.PublicationXref

elementId - Variable in class org.pathvisio.libgpml.model.PathwayObject

ELEMENTID - org.pathvisio.libgpml.prop.StaticProperty

elementIdToPathwayObject - Variable in class org.pathvisio.libgpml.model.PathwayModel

elementRef - Variable in class org.pathvisio.libgpml.model.LineElement.LinePoint

elementRefToLinePoints - Variable in class org.pathvisio.libgpml.model.PathwayModel

ellipse - Static variable in class org.pathvisio.libgpml.model.type.ShapeType

emitWarning(String) - Method in class org.pathvisio.libgpml.io.AbstractPathwayModelFormat

Can be used by overriding classes to add to the list of warnings.

encodeFont(Font) - Static method in class org.pathvisio.libgpml.util.Utils

Encodes a font to a string that can be converted back into a font object using Font.decode(String)

end - Variable in class org.pathvisio.libgpml.model.connector.ConnectorShape.Segment

end - Variable in class org.pathvisio.libgpml.model.TestGraph

endArrowHeadType - Variable in class org.pathvisio.libgpml.model.LineElement

ENDARROWHEADTYPE - org.pathvisio.libgpml.prop.StaticProperty

ENDELEMENTREF - org.pathvisio.libgpml.prop.StaticProperty

ENDOPLASMIC_RETICULUM - org.pathvisio.libgpml.model.shape.ShapeCatalog.Internal

ENDOPLASMIC_RETICULUM - Static variable in class org.pathvisio.libgpml.model.type.ShapeType

ENDX - org.pathvisio.libgpml.prop.StaticProperty

ENDY - org.pathvisio.libgpml.prop.StaticProperty

EPIGENETIC_MODIFICATION - Static variable in class org.pathvisio.libgpml.model.type.StateType

equalsAnnotation(Annotation) - Method in class org.pathvisio.libgpml.model.Annotation

Compares this annotation to the given annotation.

equalsCitation(Citation) - Method in class org.pathvisio.libgpml.model.Citation

Compares this citation to the given citation.

equalsEvidence(Evidence) - Method in class org.pathvisio.libgpml.model.Evidence

Compares this evidence to the given evidence.

equivalentXrefs(Xref, Xref) - Static method in class org.pathvisio.libgpml.util.XrefUtils

This method checks whether two Xref(s) are equal in value.

er1 - Variable in class org.pathvisio.libgpml.model.TestReferenceable

er2 - Variable in class org.pathvisio.libgpml.model.TestReferenceable

error(String) - Method in class org.pathvisio.libgpml.debug.Logger

error(String, Throwable) - Method in class org.pathvisio.libgpml.debug.Logger

errorEnabled - Variable in class org.pathvisio.libgpml.debug.Logger

EVENT - Static variable in class org.pathvisio.libgpml.model.type.DataNodeType

EventDispatchThreadOnly - Annotation Type in org.pathvisio.libgpml.debug

Indicates that this class or method should only be accessed by the Event Dispatch Thread

evidence - Variable in class org.pathvisio.libgpml.model.PathwayElement.EvidenceRef

Evidence - Class in org.pathvisio.libgpml.model

This class stores information for an Evidence.

Evidence(String, Xref, String) - Constructor for class org.pathvisio.libgpml.model.Evidence

Instantiates an Evidence pathway element given all possible parameters: elementId, parent pathway model, value, xref, and url.

EVIDENCE - org.pathvisio.libgpml.model.type.ObjectType

A evidence provides information on type of scientific evidence.

evidenceable - Variable in class org.pathvisio.libgpml.model.PathwayElement.EvidenceRef

EvidenceRef(Evidence) - Constructor for class org.pathvisio.libgpml.model.PathwayElement.EvidenceRef

Instantiates an EvidenceRef given source Evidence and initializes evidenceRefs lists.

EVIDENCEREF - org.pathvisio.libgpml.prop.StaticProperty

EVIDENCEREF - org.pathvisio.libgpml.prop.StaticPropertyType

evidenceRefs - Variable in class org.pathvisio.libgpml.model.Evidence

evidenceRefs with this evidence as source

evidenceRefs - Variable in class org.pathvisio.libgpml.model.PathwayElement.AnnotationRef

evidenceRefs - Variable in class org.pathvisio.libgpml.model.PathwayElement

evidences - Variable in class org.pathvisio.libgpml.model.PathwayModel

expectedModCount - Variable in class org.pathvisio.libgpml.debug.DebugList.DebugIterator

EXTRACELLULAR_REGION - Static variable in class org.pathvisio.libgpml.model.type.ShapeType

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