Uses of Class
org.pathvisio.libgpml.model.type.AnnotationType
Package | Description |
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org.pathvisio.libgpml.model |
Classes representing the pathway "model".
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org.pathvisio.libgpml.model.type |
Enum type classes
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Uses of AnnotationType in org.pathvisio.libgpml.model
Fields in org.pathvisio.libgpml.model declared as AnnotationType Modifier and Type Field Description private AnnotationType
Annotation. type
Methods in org.pathvisio.libgpml.model that return AnnotationType Modifier and Type Method Description AnnotationType
Annotation. getType()
Returns the type of this annotation.Methods in org.pathvisio.libgpml.model with parameters of type AnnotationType Modifier and Type Method Description PathwayElement.AnnotationRef
PathwayElement. addAnnotation(java.lang.String elementId, java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Creates a annotation with given properties, and adds annotation to pathway model.PathwayElement.AnnotationRef
PathwayElement. addAnnotation(java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Creates a annotation with given properties, and adds annotation to pathway model.PathwayElement.AnnotationRef
PathwayElement.CitationRef. addAnnotation(java.lang.String elementId, java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Creates a annotation with given properties, and adds annotation to pathway model.PathwayElement.AnnotationRef
PathwayElement.CitationRef. addAnnotation(java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Creates a annotation with given properties, and adds annotation to pathway model.PathwayElement.AnnotationRef
Referenceable.Annotatable. addAnnotation(java.lang.String elementId, java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Creates a annotation with given properties, and adds annotation to pathway model.PathwayElement.AnnotationRef
Referenceable.Annotatable. addAnnotation(java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Creates a annotation with given properties, and adds annotation to pathway model.protected void
Annotation. setType(AnnotationType v)
Sets the type of this annotation.Constructors in org.pathvisio.libgpml.model with parameters of type AnnotationType Constructor Description Annotation(java.lang.String value, AnnotationType type, org.bridgedb.Xref xref, java.lang.String urlLink)
Instantiates an Annotation pathway element given all possible parameters: elementId, parent pathway model, value, type, url, and xref. -
Uses of AnnotationType in org.pathvisio.libgpml.model.type
Fields in org.pathvisio.libgpml.model.type declared as AnnotationType Modifier and Type Field Description static AnnotationType
AnnotationType. ONTOLOGY
static AnnotationType
AnnotationType. TAXONOMY
static AnnotationType
AnnotationType. UNDEFINED
Fields in org.pathvisio.libgpml.model.type with type parameters of type AnnotationType Modifier and Type Field Description private static java.util.Map<java.lang.String,AnnotationType>
AnnotationType. nameToAnnotationType
Methods in org.pathvisio.libgpml.model.type that return AnnotationType Modifier and Type Method Description static AnnotationType
AnnotationType. fromName(java.lang.String name)
Returns the AnnotationType from given string name.static AnnotationType[]
AnnotationType. getValues()
Returns the annotation type values of all AnnotationTypes as a list.static AnnotationType
AnnotationType. register(java.lang.String name)
Returns an AnnotationType from a given string identifier name.