Timeline
06/29/09:
- 12:27 WikiMigration edited by
- (diff)
- 12:26 WikiMigration edited by
- (diff)
- 12:25 GpmlExperimentNotes edited by
- (diff)
- 12:22 BioPaxPlusProposal edited by
- (diff)
- 12:18 BioPaxPlusProposal created by
- 12:17 GpmlAndBioPax edited by
- (diff)
- 12:17 GpmlAndBioPax edited by
- (diff)
- 12:15 GpmlExperimentNotes edited by
- (diff)
- 12:13 GpmlExperimentNotes edited by
- (diff)
- 12:11 GpmlExperimentNotes edited by
- (diff)
- 12:09 GpmlExperimentNotes created by
- 12:08 GpmlAndBioPax created by
- 12:06 WikiStart edited by
- (diff)
- 12:06 WikiStart edited by
- (diff)
- 12:06 WikiStart edited by
- (diff)
- 11:28 RunPathvisioOffline edited by
- (diff)
- 11:19 GpmlDiffPatch edited by
- (diff)
- 11:18 GpmlDiffPatch edited by
- (diff)
- 11:18 GpmlDiffPatch edited by
- (diff)
- 11:18 GpmlDiffPatch edited by
- (diff)
- 11:16 GpmlDiffPatch created by
- 11:04 WikiStart edited by
- (diff)
- 11:03 RunPathvisioOffline edited by
- (diff)
- 11:03 RunPathvisioOffline created by
- 10:59 WikiStart edited by
- (diff)
- 10:55 WikiStart edited by
- (diff)
06/26/09:
06/23/09:
- 20:05 Ticket #940 (All anchors disappeard) created by
- Jildau Bouwman reported that she lost all anchors while working on a large …
- 18:55 Changeset [2660] by
- Replace the modified gpml.jar (I inserted some debugging code lines) to …
- 18:41 Changeset [2659] by
- This version modifies the code to improve the UI according to Thomas’s …
- 13:11 Changeset [2658] by
- Fixed some style problems
- 12:33 Changeset [2657] by
- Fixed & Improved o.p.gpmldiff JUnit test
- 11:31 Changeset [2656] by
- Various bugfixes in gpmlpatch
- 11:31 Changeset [2655] by
- BridgeDb refactored
06/20/09:
- 16:28 Ticket #939 (Pathvisio Wiki links to version 1.1 with plugins) created by
- The links on the PathVisio Wiki are a bit difficult to operate with …
- 16:22 Ticket #938 (visualization dialog setup is not logic) created by
- Imho the visualization dialog should be reorganized. Basic works …
- 16:13 Ticket #937 (Basic visualization is 'lost' while working) created by
- If I select basic visualization, click new and enter a rule, this …
06/19/09:
- 20:08 Milestone milestone_15 completed
- * Goals t.b.d. * Jun 15 feature freeze * Jun 19 …
- 19:42 Changeset [2654] by
- tag for M15.0
- 19:42 Changeset [2653] by
- branch for M15
- 16:06 Ticket #878 (Incorrectly parsed number without warning in GexTxtImporter) closed by
- fixed: added toUpperCase() on input string.
- 15:58 Changeset [2652] by
- fixed #878
- 14:38 Ticket #936 (Backup script doesn't export all tables) closed by
- fixed: show view and create view permissions were missing.
- 14:38 WikiPathwaysLocalSetup edited by
- (diff)
- 14:33 Ticket #936 (Backup script doesn't export all tables) created by
- Tables user_page_hits, user_page_views, watchlist and webservice_log are …
- 02:19 Ticket #935 ("upload" category in Browse) created by
- On the test site, there is a category labeled "upload" in Browse. It is …
06/18/09:
- 12:11 Changeset [2651] by
- moved Relation class to org.pathvisio.util
06/17/09:
- 10:41 Ticket #934 (Regex to add categories should be hidden or replaced) created by
- The function addToCategory in Categoryhandler.php : 27, uses regex to add …
06/16/09:
- 13:12 Ticket #929 (OutOfMemory error when connecting to all pgdbs on WP server) closed by
- fixed: Was a bug in Java 5. When running with Java 6 it works fine. Updated the …
- 01:09 WikiMigration edited by
- (diff)
- 00:56 CytoscapeWorkflow created by
06/15/09:
06/14/09:
- 15:15 Ticket #933 (Read species info in Pathway.php and pathwayInfo.php from bridgedb text ...) created by
- Modify the species list (Pathway.php) and linkout list (pathwayInfo.php) …
06/13/09:
- 01:08 Ticket #919 (Flatfile export doesn't work with new Ensembl system) closed by
- fixed
- 01:08 Ticket #918 (Site stats won't count new gene systems) closed by
- fixed
- 01:07 Ticket #909 (Can't delete pathway) closed by
- fixed
- 00:09 Changeset [2650] by
- This version of code fixed the org.bridgedb.Organism error in the …
06/12/09:
- 13:05 WikiPathwaysLocalSetup edited by
- (diff)
- 11:25 WikiPathwaysLocalSetup edited by
- (diff)
- 05:32 Changeset [2649] by
- This version fixed the compile errors due to the nonexistence of the …
06/11/09:
- 14:09 Changeset [2648] by
- WikiPathwaysSearch?: fixed dependencies
- 13:55 Changeset [2647] by
- adapted wikipathways-search to new bridgedb libraries
- 13:53 Changeset [2646] by
- adapted wikipathways-search to new bridgedb libraries
- 11:33 WikiMigration edited by
- (diff)
- 11:29 WikiMigration edited by
- (diff)
- 11:11 Ticket #932 (Check that gpml names for datasource are no longer than 20 chars) created by
- Gpml requires the datasource to be less than 20 chars long. Make sure all …
- 11:11 Changeset [2645] by
- fixed incorrect call of VPathway.dispose() in ColorExporter? (breaking …
- 10:24 Changeset [2644] by
- atlas mapper: moved ensembl code logic to server side
- 10:18 Changeset [2643] by
- adapted AtlasMapper? to species specific Ensembl codes
- 10:13 Ticket #931 (Shortcut method for getting the right ensembl datasource) created by
- If you want to map to an Ensembl id the species may vary, you now first …
- 09:58 Changeset [2642] by
- added bridgedb libs to AtlasMapper?
- 09:52 Changeset [2641] by
- fix tomcat comflict in AtlasMapper? build.xml
- 09:13 Changeset [2640] by
- added script to calculate atlas mapper stats removed fixed build path in …
06/10/09:
- 22:55 Ticket #930 (Opening extended references bug) created by
- On the pathway: …
- 20:45 DevMeetings edited by
- (diff)
- 20:11 Ticket #928 (Issues with new ensembl codes and web service) closed by
- fixed: Ok, updated the pathways and database. Now it gives: […] Which is …
- 20:08 DevMeetings edited by
- (diff)
- 19:52 DevMeetings edited by
- (diff)
- 19:30 Changeset [2639] by
- Changed ArrowShape? constants to enum, updated ArrowShape? doc.
- 15:32 WikiPathwaysLocalSetup edited by
- (diff)
- 15:22 WikiPathwaysLocalSetup edited by
- (diff)
- 15:17 DevMeetings edited by
- (diff)
- 15:17 DevMeetings edited by
- (diff)
- 14:25 DevMeetings edited by
- (diff)
- 14:22 DevMeetings edited by
- (diff)
- 13:53 DevMeetings edited by
- (diff)
- 10:09 Ticket #929 (OutOfMemory error when connecting to all pgdbs on WP server) created by
- When I run the indexer on the WP server with all gdb's I get this error: …
06/09/09:
- 15:49 Changeset [2638] by
- added bridgedb jars to lucene indexer
- 15:47 Changeset [2637] by
- added bridgedb-bio.jar to lucene indexer
- 15:41 Ticket #927 (PathwayElement.getDataSource returns datasource without system code) closed by
- fixed: Added call to BioDataSource?.init() to GpmlFormat?, so the system codes are …
- 15:36 Changeset [2636] by
- added BioDataSource?.init() call to GpmlFormat? (fixes #927)
- 14:33 Changeset [2635] by
- added bridgedb-bio to wpclient
- 14:32 Changeset [2634] by
- updated bridgedb-bio.jar
- 14:22 Changeset [2633] by
- updated bridgedb.jar
- 14:22 Changeset [2632] by
- added AtlasCache? method to allow for calculating statistics
- 14:22 Changeset [2631] by
- fixed compiler errors in AtlasMapper? due to changes in bridgedb API
- 14:22 Changeset [2630] by
- changed name of wikipathways-search html file (so you don't have to type …
- 14:22 Changeset [2629] by
- changed name of AtlasMapper? html file (so you don't have to type it …
- 13:46 Changeset [2628] by
- Updated bridgedb-bio
- 04:44 Changeset [2627] by
- This version fixed the problems that Thomas has found in the previous …
06/08/09:
- 17:16 Ticket #891 (Really large pathway could not be imported) closed by
- fixed: Php's preg_match function fails without notice when the string is too …
- 15:24 Ticket #910 (Download MAPP feature broken) closed by
- fixed
- 12:22 Ticket #928 (Issues with new ensembl codes and web service) created by
- The findPathwaysByXref method doesn't work correctly with Ensembl anymore. …
- 10:27 Ticket #927 (PathwayElement.getDataSource returns datasource without system code) created by
- The DataSource? object returned by PathwayElement?.getDataSource and …
- 10:23 Ticket #924 (getPathwayHistory doesn't return History rows using Perl SOAP library) closed by
- fixed: See …
06/04/09:
- 13:21 Ticket #926 (Loading main page is very slow again) closed by
- fixed: Was caused by introduction of new species that didn't have any pathways …
- 13:13 Ticket #926 (Loading main page is very slow again) created by
- Loading the main page takes >5 seconds since the new release, which is …
- 10:48 Ticket #925 (Regex to check organism fails on very large pathway) closed by
- fixed: Fixed it by first extracting the <Pathway ...> part of the string using …
- 10:48 Ticket #925 (Regex to check organism fails on very large pathway) created by
- When trying to upload a very large GPML, the preg_match to determine if a …
06/03/09:
- 20:23 Ticket #924 (getPathwayHistory doesn't return History rows using Perl SOAP library) created by
- I am having problems with the getPathwayHistory wp webservice function. …
06/02/09:
- 12:33 Ticket #921 (pass argument is really gpml in updatePathway documentation) closed by
- fixed
- 10:31 Ticket #923 (Upload button for pathways) created by
- It would be handy to have an upload button on the create pathway page to …
- 03:59 Changeset [2626] by
- This version tries to fix the compile errors by importing …
- 00:11 Ticket #922 (Saving fails after automatic updating of Ensembl refs) created by
- I tried to edit this pathway: …
06/01/09:
- 21:31 Changeset [2625] by
- In this version, the bug “teleporting table effect” has been fixed. Also, …
Note: See TracTimeline
for information about the timeline view.
