Timeline


and .

05/20/09:

22:50 Ticket #907 (Feature: mim-cleavage line type can only be adjusted on one end of the ...) created by KristinaHanspers
Currently, the mim-cleavage line type can only be adjusted on one end, the …
22:47 Ticket #906 (Feature: Add ability to change line thickness) created by KristinaHanspers
It would be nice to be able to change the thickness of lines in …
21:19 Ticket #895 (CNFE: org.bridgedb.DataSource in DiffViewer) closed by martijn
fixed
19:24 Ticket #905 (Batch Download Not Working for 'All Pathways') created by AlexanderPico
The links are showing up. I did some work with batchDownload, so it's …
19:21 DevMeetings edited by AlexanderPico
(diff)
16:18 WikiPathwaysTestProtocol edited by martijn
(diff)
16:08 Ticket #904 (Safari internetsite upload) created by JonasHummel
I used windows XP (SP3) with Safari 4PublicBeta528.17. There occurs many …
16:01 Ticket #903 (Ineternet explorer: Curation tags: pencil and red cross not visible) created by Pieter_Giesbertz
Internet explorer 6 was used. Both in test as in normal version of …
15:56 Ticket #902 (Safari .svg error) created by JonasHummel
I used Windows XP (SP3) with Safari 4PublicBeta528.17. There is no option …
14:27 Ticket #901 (XmlRpcException in Chrome) created by JonasHummel
When I modify the description of a pathway I get an XmlRpcException? This …
11:39 DevMeetings edited by martijn
(diff)

05/19/09:

16:18 Ticket #633 (legend in pathway views) closed by martijn
fixed: Legend will be shown in side-panel. This is a rather complex feature, so …
15:27 Changeset [2608] by martijn
Improved rendering of gradients
14:49 Changeset [2607] by martijn
Implemented Legend drawing
00:52 EverythingGpml edited by KristinaHanspers
(diff)
00:50 PathVisioDocumentation edited by KristinaHanspers
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05/18/09:

08:34 Ticket #568 (siteStats extension should be generalized to work on Portals) closed by AlexanderPico
fixed: came up with a simple counting strategy that works on Curation Tags or …
04:01 WikiPathwaysLocalSetup edited by AlexanderPico
(diff)

05/14/09:

19:59 Changeset [2606] by martijn
Milestone 13.1 release, includes fix for diffapplet
19:46 Changeset [2605] by martijn
Fixed diff applet classPath
16:35 Changeset [2604] by martijn
Fixed diff applet classPath
16:31 Changeset [2603] by martijn
Start of Legend side-panel
16:31 Changeset [2602] by martijn
Updated javadoc on Lines and Connectors
16:31 Changeset [2601] by martijn
Updated bridgedb.jar
02:11 PathwayStatistics edited by KristinaHanspers
(diff)
02:06 PathwayStatistics created by KristinaHanspers
02:05 PathVisioHelp edited by KristinaHanspers
(diff)
02:04 ExperimentalData edited by KristinaHanspers
(diff)
01:43 WikiMigration edited by KristinaHanspers
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05/13/09:

23:32 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
(diff)
22:47 Ticket #896 (Insert genes dialog) closed by martijn
duplicate: Adem already started work on this, as #846
22:44 Ticket #884 (HuGo links in human gene databases do not work) closed by martijn
fixed
22:42 Changeset [2600] by martijn
Unit test update
22:42 Changeset [2599] by martijn
Filter DataSource? combo's by organism (if set)
21:46 Changeset [2598] by martijn
Moving syscodeTable tool to bridgedb
21:46 Changeset [2597] by martijn
Updated bridgedb.jar
19:32 Changeset [2596] by martijn
Changed Plugin Manager dialog to a tree view
15:41 Changeset [2595] by martijn
Try different class loader for webstart, show name of exception in …
14:39 Changeset [2594] by martijn
Improved plugin error reporting

05/12/09:

15:54 Changeset [2593] by martijn
Forgot new file
15:42 Changeset [2592] by martijn
Added menu item to show info about loaded plugins
14:43 WikiMigration edited by martijn
(diff)
14:41 Cytoscape_plugin edited by martijn
(diff)
14:32 Cytoscape_plugin edited by martijn
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14:31 Gpml-groups-cy.png attached to Cytoscape_plugin by martijn
14:31 Gpml-anchors.png attached to Cytoscape_plugin by martijn
14:31 Gpml-groups.png attached to Cytoscape_plugin by martijn
14:30 CytoscapePluginP38Mapk.png attached to Cytoscape_plugin by martijn
The p38 MAPK signalling pathway in Cytoscape
14:30 CytoscapePluginShortestPath.png attached to Cytoscape_plugin by martijn
Finding the shortest path between two nodes on a GPML
14:29 CytoscapePluginLitsearchExample.png attached to Cytoscape_plugin by martijn
Extending GPML pathway using the LitSearch? plugin
14:27 WikiMigration edited by martijn
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14:26 Cytoscape_plugin edited by martijn
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14:23 CytoscapePluginExample.png attached to Cytoscape_plugin by martijn
Example pathway in Cytoscape (left) and PathVisio (right)
14:21 WikiStart edited by martijn
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14:17 Cytoscape_plugin created by martijn
14:14 WikiStart edited by martijn
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14:13 WikiStart edited by martijn
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14:13 WikiStart edited by martijn
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14:13 WikiStart edited by martijn
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14:09 WikiStart edited by martijn
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13:43 WikiStart edited by martijn
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01:24 WikiMigration edited by AlexanderPico
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01:24 WikiMigration edited by AlexanderPico
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00:58 WikiMigration edited by KristinaHanspers
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00:57 DownloadPathVisio created by KristinaHanspers
00:57 WikiStart edited by KristinaHanspers
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00:56 WikiMigration edited by KristinaHanspers
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00:55 WikiStart edited by KristinaHanspers
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00:53 Ss1.PNG attached to GetStartedWithPathVisioDevelopment by KristinaHanspers
00:51 Image1.png attached to GetStartedWithPathVisioDevelopment by KristinaHanspers
00:49 Eclipse-step5.PNG attached to GetStartedWithPathVisioDevelopment by KristinaHanspers
00:49 Eclipse-step4.PNG attached to GetStartedWithPathVisioDevelopment by KristinaHanspers
00:48 Eclipse-step3.PNG attached to GetStartedWithPathVisioDevelopment by KristinaHanspers
00:46 PathVisio edited by KristinaHanspers
(diff)
00:46 Rc_ss3.png attached to PathVisio by KristinaHanspers
00:46 Rc_ss2.png attached to PathVisio by KristinaHanspers
00:44 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:43 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:41 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:40 Ticket #890 (Remove "titles only" option from search) closed by AlexanderPico
fixed: removed 'titles only' option and added background image to make search box …
00:40 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:39 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:32 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:32 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:30 Eclipse-step4a.PNG attached to GetStartedWithPathVisioDevelopment by KristinaHanspers
00:29 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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00:24 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
(diff)
00:03 PathVisio edited by KristinaHanspers
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00:00 WikiMigration edited by KristinaHanspers
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05/11/09:

23:58 PathVisio edited by KristinaHanspers
(diff)
23:57 PathVisio edited by KristinaHanspers
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23:56 Rc_ss1.png attached to PathVisio by KristinaHanspers
23:54 PathVisio edited by KristinaHanspers
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23:53 PathVisio edited by KristinaHanspers
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23:53 PathVisio edited by KristinaHanspers
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23:52 PathVisio edited by KristinaHanspers
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23:50 PathVisio edited by KristinaHanspers
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23:49 PathVisio edited by KristinaHanspers
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23:48 ReleaseNotes edited by KristinaHanspers
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23:47 ReleaseNotes created by KristinaHanspers
23:45 PathVisio edited by KristinaHanspers
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23:45 PathVisio edited by KristinaHanspers
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23:44 PathVisio created by KristinaHanspers
23:41 PathVisioTutorials created by KristinaHanspers
23:35 WikiStart edited by KristinaHanspers
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23:27 Ticket #894 (Wikipathways: pathway misses previously added references) closed by AlexanderPico
fixed: fixed. ready for M14 release.
23:22 KeggConverter edited by KristinaHanspers
(diff)
23:22 WikiPathwaysContactTemplates edited by KristinaHanspers
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23:21 WikiPathwaysLocalSetup edited by KristinaHanspers
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23:21 WikiPathwaysTestProtocol edited by KristinaHanspers
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23:18 GetStartedWithPathVisioDevelopment edited by KristinaHanspers
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23:17 PathVisioDocumentation edited by KristinaHanspers
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23:16 WikiMigration edited by KristinaHanspers
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23:15 Ticket #900 (Generic color-sets) created by KristinaHanspers
Currently you have to re-create your color-sets for every new dataset. It …
23:14 Ticket #899 (Magnifier glass) created by KristinaHanspers
It would be cool if you could use your mouse cursor as a magnifier glass …
23:13 Ticket #898 (Advanced edit options) created by KristinaHanspers
Advanced edit options: * Snap line angles (to steps of 45 degrees) …
23:11 Ticket #897 (Advanced pathway search) created by KristinaHanspers
The search panel lets you search a directory of gpml files for a single …
23:10 Ticket #896 (Insert genes dialog) created by KristinaHanspers
Create a dialog window that lets you paste a number of gene identifiers, …
23:08 WikiMigration edited by KristinaHanspers
(diff)
23:01 EverythingGpml edited by KristinaHanspers
(diff)
22:58 Ticket #894 (Wikipathways: pathway misses previously added references) reopened by AlexanderPico
Nevermind. The 'Sandbox' pathway had *another* problem in addition to this …
22:53 EverythingGpml edited by KristinaHanspers
(diff)
22:50 EverythingGpml edited by KristinaHanspers
(diff)
22:45 Ticket #894 (Wikipathways: pathway misses previously added references) closed by AlexanderPico
fixed: From what I can tell, it's not a counting problem, but a problem with …
22:43 EverythingGpml edited by KristinaHanspers
(diff)
22:43 EverythingGpml edited by KristinaHanspers
(diff)
22:15 EverythingGpml created by KristinaHanspers
22:12 WikiMigration edited by martijn
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22:10 WikiMigration edited by KristinaHanspers
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22:08 DevMeetings edited by KristinaHanspers
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22:07 DevMeetings edited by KristinaHanspers
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22:04 Ticket #895 (CNFE: org.bridgedb.DataSource in DiffViewer) created by martijn
See the full log below. It looks like there the reference to bridgedb.jar …
22:03 DevMeetings edited by KristinaHanspers
(diff)
20:56 Image_Munin-memory.png attached to DevMeetings by KristinaHanspers
20:55 DevMeetings edited by KristinaHanspers
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20:46 DevMeetings created by KristinaHanspers
20:34 WikiStart edited by KristinaHanspers
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20:29 WikiStart edited by KristinaHanspers
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20:27 WikiMigration edited by KristinaHanspers
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20:27 PathVisioFaq edited by KristinaHanspers
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20:26 PathVisioFaq created by KristinaHanspers
20:23 WikiMigration edited by KristinaHanspers
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20:22 WikiMigration edited by AlexanderPico
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20:22 MailingLists edited by AlexanderPico
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20:19 PathVisioDocumentation created by KristinaHanspers
20:15 WikiStart edited by KristinaHanspers
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20:03 MailingLists created by AlexanderPico
19:58 WikiStart edited by AlexanderPico
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19:49 WikiMigration edited by AlexanderPico
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19:49 WikiMigration edited by AlexanderPico
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19:49 WikiStart edited by AlexanderPico
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19:48 HowToCite created by AlexanderPico
19:46 WikiStart edited by AlexanderPico
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19:42 WikiMigration edited by AlexanderPico
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19:28 WikiMigration created by AlexanderPico
19:24 WikiStart edited by AlexanderPico
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09:44 Ticket #894 (Wikipathways: pathway misses previously added references) created by Pieter_Giesbertz
After addition of references and saving, the bibliography part mentions …

05/08/09:

01:39 EditingPathways edited by KristinaHanspers
(diff)
01:26 ExperimentalData edited by KristinaHanspers
(diff)
01:26 EditingPathways edited by KristinaHanspers
(diff)
01:25 SearchResults.png attached to SearchResults by KristinaHanspers
01:25 SearchResults created by KristinaHanspers
01:24 PathVisioHelp edited by KristinaHanspers
(diff)
01:08 SearchInterface.png attached to SearchInterface by KristinaHanspers
01:08 SearchInterface created by KristinaHanspers
01:08 PathVisioHelp edited by KristinaHanspers
(diff)
01:02 SearchInterface.png attached to PathVisioHelp by KristinaHanspers
00:57 PathVisioHelp edited by KristinaHanspers
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00:57 PathVisioHelp edited by KristinaHanspers
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00:56 PathVisioHelp edited by KristinaHanspers
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00:50 PathVisioHelp edited by KristinaHanspers
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05/07/09:

14:51 Ticket #893 (Nice url's for portals) created by martijn
Implement nice URL's for portals e.g. …

05/06/09:

19:45 PathVisioHelp edited by KristinaHanspers
(diff)
19:44 Apoptosis2.png attached to PathVisioHelp by KristinaHanspers
19:42 PathVisioHelp edited by KristinaHanspers
(diff)
19:41 PathVisioHelp edited by KristinaHanspers
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19:35 EditingPathways edited by KristinaHanspers
(diff)
19:33 PathVisioHelp edited by KristinaHanspers
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05/04/09:

18:28 Changeset [2591] by martijn
Typo in daily build script
14:58 Changeset [2590] by martijn
DailyBuild?: different location for bridgedb apidocs

05/03/09:

22:47 Ticket #892 (Confusing error message on failed pathway save) created by martijn
This error log message can appear when a Pathway save fails: …
22:39 Ticket #891 (Really large pathway could not be imported) created by martijn
See attached Pathway. The following error occurs when clicking the save to …
15:08 WikiStart edited by martijn
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15:08 WikiStart edited by martijn
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15:04 WikiStart edited by martijn
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15:04 WikiStart edited by martijn
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15:04 PluginDevelopment edited by martijn
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15:03 PluginDevelopment created by martijn
15:00 WikiStart edited by martijn
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13:59 PathwayStyles edited by martijn
(diff)
13:57 PathwayStyles edited by martijn
(diff)
13:57 PathwayStyles edited by martijn
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13:57 PathwayStyles edited by martijn
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13:56 PathwayStyles created by martijn
13:49 WikiStart edited by martijn
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13:48 WikiStart edited by martijn
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13:48 WikiStart edited by martijn
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13:47 WikiStart edited by martijn
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13:46 CitingPathVisio created by martijn
13:44 WikiStart edited by martijn
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04/29/09:

19:57 Ticket #890 (Remove "titles only" option from search) created by AlexanderPico
Now that we have stable IDs as titles, I'm pretty sure this option is …
19:26 WikiPathwaysLocalSetup edited by AlexanderPico
(diff)
12:08 HtmlExporter edited by thomaskelder
(diff)
12:07 HtmlExporter edited by thomaskelder
(diff)
12:07 HtmlExporter edited by thomaskelder
(diff)
12:04 HtmlExporter edited by thomaskelder
(diff)
12:04 HtmlExporter created by thomaskelder
11:52 WikiStart edited by thomaskelder
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04/28/09:

20:29 Ticket #889 (PathVisio file downloader from PV site doesn't work) created by KristinaHanspers
The Downloader that is used on the PV site (when you click download links …

04/27/09:

15:19 WikiPathwaysLocalSetup edited by thomaskelder
(diff)

04/24/09:

16:12 Changeset [2589] by martijn
Fixed typo in tarsrc build target
15:20 Changeset [2588] by thomas
made backpage text providers accessible for plugins
15:04 Ticket #869 (File name in z-score report) closed by thomaskelder
fixed: Added preference called STATS_RESULT_INCLUDE_FILENAME, if true the …
14:30 Changeset [2587] by martijn
Milestone 13 release tag
14:29 Changeset [2586] by martijn
Milestone 13 release branch
14:25 Milestone milestone_13 completed
* apr 20 Feature freeze * apr 24 Release
10:56 Ticket #888 (No application name in about box for applet) closed by thomaskelder
fixed
10:30 Ticket #888 (No application name in about box for applet) created by thomaskelder
The about box shows "Application name undefined" for the application name.
10:29 Ticket #887 (About RMB menu option doesn't work) closed by thomaskelder
fixed
10:26 Changeset [2585] by thomas
added application name in applet about box (fixes #888)
10:19 Changeset [2584] by thomas
- added image for applet about box (fixes #887)
10:15 Changeset [2583] by martijn
copy bridgedb.jar with applets
10:07 Changeset [2582] by thomas
zscore plugin: - added preference to include filename in z-score export - …
03:57 Changeset [2581] by XueminLiu
test file

04/23/09:

22:17 Ticket #887 (About RMB menu option doesn't work) created by martijn
In applet, right-click in empty area select "about" option Nothing …
21:43 Changeset [2580] by martijn
Included bridgedb.jar in webstart
21:43 Changeset [2579] by martijn
Mistake in daily build prevents lucene-indexer test from working
20:23 ExperimentalData edited by KristinaHanspers
(diff)
20:13 ExperimentalData edited by KristinaHanspers
(diff)
12:10 Ticket #708 (Email notification doesn't work for discussion pages) closed by thomaskelder
fixed: 2) was only a problem on the test site, which still had old enotif message …
11:19 Ticket #708 (Email notification doesn't work for discussion pages) reopened by thomaskelder
I just tested it and there are still a few problems remaining: 1) You …
10:46 Changeset [2578] by thomas
created directory for Xuemin's gsoc project
10:35 GpmlJavaExample created by thomaskelder
10:34 WikiStart edited by thomaskelder
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02:18 CoordinatedProjectPlanning edited by AlexanderPico
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01:43 ExperimentalData edited by KristinaHanspers
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01:43 ExperimentalData edited by KristinaHanspers
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01:25 ExperimentalData edited by KristinaHanspers
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04/22/09:

23:52 EditingPathways edited by KristinaHanspers
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23:27 PathVisioHelp edited by KristinaHanspers
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23:25 PathVisioHelp edited by KristinaHanspers
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23:20 PathVisioHelp edited by KristinaHanspers
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23:18 PathVisioHelp edited by KristinaHanspers
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23:18 PathVisioHelp edited by KristinaHanspers
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23:17 PathVisioHelp edited by KristinaHanspers
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23:16 OtherFeatures created by KristinaHanspers
23:16 PathVisioHelp edited by KristinaHanspers
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23:14 DatabasesMapps edited by KristinaHanspers
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23:14 DatabasesMapps created by KristinaHanspers
23:14 PathVisioHelp edited by KristinaHanspers
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23:12 ExperimentalData created by KristinaHanspers
23:12 PathVisioHelp edited by KristinaHanspers
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23:11 EditingPathways created by KristinaHanspers
23:10 PathVisioHelp edited by KristinaHanspers
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23:06 PathVisioHelp edited by KristinaHanspers
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20:59 WikiStart edited by thomaskelder
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20:22 PathVisioHelp edited by KristinaHanspers
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20:00 PathVisioHelp edited by KristinaHanspers
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19:52 WikiStart edited by AlexanderPico
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19:50 PathVisioHelp edited by KristinaHanspers
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19:45 PathVisioHelp edited by KristinaHanspers
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19:33 PathVisioHelp edited by KristinaHanspers
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16:03 Ticket #881 (Add a getInstance method to GpmlPlugin) closed by thomaskelder
fixed
15:17 Changeset [2577] by thomas
added FileUtils? method to recursively get files without filtering …
15:17 Changeset [2576] by thomas
cytoscape plugin: -added bridgedb to build.xml -added static getInstance …
01:43 PathVisioHelp edited by KristinaHanspers
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01:35 PathVisioHelp edited by KristinaHanspers
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01:33 PathVisioHelp edited by KristinaHanspers
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01:31 PathVisioHelp edited by KristinaHanspers
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01:28 PathVisioHelp edited by KristinaHanspers
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04/21/09:

21:02 PathVisioHelp edited by KristinaHanspers
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21:01 PathVisioHelp edited by KristinaHanspers
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19:43 PathVisioHelp edited by KristinaHanspers
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19:42 PathVisioHelp edited by KristinaHanspers
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19:35 PathVisioHelp edited by KristinaHanspers
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19:34 PathVisioHelp edited by KristinaHanspers
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19:26 PathVisioHelp edited by KristinaHanspers
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14:19 Wikipathways-Biocurator.ppt attached to PresentationMaterial by Evelo
Prsentation about how we assist knowledge connection, given at Biocurator …
01:22 PathVisioHelp edited by KristinaHanspers
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01:20 PathVisioHelp edited by KristinaHanspers
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01:19 PathVisioHelp edited by KristinaHanspers
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01:17 PathVisioHelp edited by KristinaHanspers
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01:16 PathVisioHelp edited by KristinaHanspers
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00:29 PathVisioHelp edited by KristinaHanspers
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00:27 PathVisioHelp edited by KristinaHanspers
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00:26 PathVisioHelp edited by KristinaHanspers
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00:16 PathVisioHelp edited by KristinaHanspers
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00:06 PathVisioHelp edited by KristinaHanspers
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00:03 PathVisioHelp edited by KristinaHanspers
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04/20/09:

23:46 PathVisioHelp edited by KristinaHanspers
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23:13 PathVisioHelp edited by KristinaHanspers
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23:09 PathVisioHelp edited by KristinaHanspers
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22:53 PathVisioHelp edited by KristinaHanspers
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22:49 PathVisioHelp edited by KristinaHanspers
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22:45 PathVisioHelp edited by KristinaHanspers
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22:44 PathVisioHelp edited by KristinaHanspers
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21:20 PathVisioHelp edited by KristinaHanspers
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20:43 PathVisioHelp edited by KristinaHanspers
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20:38 PathVisioHelp edited by KristinaHanspers
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20:14 PathVisioHelp edited by KristinaHanspers
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20:13 PathVisioHelp edited by KristinaHanspers
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Note: See TracTimeline for information about the timeline view.