Timeline


and .

09/14/07:

17:09 Changeset [1275] by martijn
Changed version strings to "1.1 (trunk)" and "(with experimental …
14:47 Changeset [1274] by martijn
Final release
14:46 Changeset [1273] by martijn
Merged r1270 from trunk
14:33 Changeset [1272] by martijn
Version no bumped to 1.0
14:23 Changeset [1271] by thomas
fixed bug in key modifiers
13:44 Changeset [1270] by thomas
fixed bug in file downloader (unable to cancel when asking to overwrite) …

09/13/07:

16:43 Changeset [1269] by martijn
Merged r1264, r1267 and 1268 from trunk
10:22 Changeset [1268] by thomas
- forgot one file for previous fix
10:20 Changeset [1267] by thomas
- disabled move objects with right mouse button - changed multi-selection …

09/12/07:

22:33 Changeset [1266] by thomas
added login check to create pathway page
22:19 Changeset [1265] by thomas
fixed create new pathway page to use applet
20:15 Changeset [1264] by thomas
fixed bug in applet when creating new pathway (wrong redirect and pathway …
14:45 Ticket #242 (Mappinfo sometimes clipped off when exporting png) created by martijn
Initial size calculation for mappinfo is difficult to get right. Right …
14:43 Ticket #222 (Exception when exporting empty pathway via batik) closed by martijn
Closing. I'm opening a separate bug for the mappinfo clip bug
14:23 Changeset [1263] by martijn
Merged r1243-1248, r1253, r1255-1256, r1259 and r1262 from trunk.
12:29 Changeset [1262] by martijn
now you can undo object deletion
11:04 Ticket #226 (Setting transparency to true also changes fill color to white instead of ...) closed by thomaskelder
fixed: fillColor is now not set to null when transparent, but alpha component is …
11:03 Changeset [1261] by thomas
fixed bug #226
10:49 Changeset [1260] by thomas
fixed bug in downloader (extracting progress monitor didn't who up when …

09/11/07:

18:21 Changeset [1259] by thomas
- disabled redundant stack/align actions in swing
18:21 Changeset [1258] by thomas
- disabled fail on classpath task in ant build - fixed filelist dataflavor …
16:59 Changeset [1257] by thomas
fixed bug in file downloader (fails when properties file doesn't exist)
16:26 Changeset [1256] by martijn
Fixed jnlp formatting bug
16:00 Changeset [1255] by martijn
Desktop Shortcut for webstart
15:38 Ticket #241 (Can't delete after undo) closed by martijn
fixed: Fixed already by Thomas
14:56 Ticket #241 (Can't delete after undo) created by martijn
to reproduce: Create an object Move it undo the movement delete the …
12:59 Changeset [1254] by martijn
Added license headers
10:12 Ticket #237 (BoardHeight and BoardWidth properties don't function) closed by thomaskelder
fixed: fixed in revision 1253
10:11 Changeset [1253] by thomas
fixed #237 (remove boardheight and boardwidth from property panel)

09/10/07:

18:27 Changeset [1252] by thomas
- fixed file/xml dataflavors under linux - removed obsolete javatar …

09/08/07:

00:45 Ticket #240 (Positioning / sizing of labels on imported MAPP files is not completely ...) created by KristinaHanspers
Labels on pathways imported from MAPP format are changed in terms of …
00:13 Ticket #239 (Drop-down selection in Properties panel doesn't work properly) created by KristinaHanspers
Drop-down selection in Properties panel doesn't work unless another field …

09/07/07:

16:14 Changeset [1251] by thomas
added scripts and webstart file for data file downloader
16:14 Changeset [1250] by thomas
worked on downloader for data files

09/06/07:

22:12 Changeset [1249] by thomas
started working on data file downloader
15:02 Ticket #238 (User should get a confirmation dialog when the 'discard pathway' button is ...) created by thomaskelder
The red button on the applet that discards the changes to the pathway and …
14:56 Ticket #237 (BoardHeight and BoardWidth properties don't function) created by thomaskelder
Editing the boardheight and boardwidth properties in the property panel …
14:54 Ticket #236 (Order of mappinfo fields should be same as in property panel) created by thomaskelder
The order of the fields displayed in the infobox (upper-right corner of …
14:52 Ticket #235 (Impossible to set custom organism that is not in the dropdown list) created by thomaskelder
It is not possible to set a custom organism (e.g. 'Smurf') that is not in …
14:49 Ticket #234 (Search should have an option to search for 'whole word only') created by thomaskelder
Currently the search feature matches any word that contains your search …
14:47 Ticket #233 (Data files (pathways, gene databases) should be available in a ...) created by thomaskelder
Currently you have to download the data files (pathways, gene databases) …
14:07 Ticket #227 (Undo doesn't work for changes made in the Properties panel) closed by thomaskelder
fixed: fixed in revision 1248
14:07 Changeset [1248] by thomas
fixed #227 (undo doesn't work in property panel (applet))
14:01 Changeset [1247] by thomas
improved action group handling in ViewActions?
12:24 Ticket #232 (Unable to delete objects after undo) closed by thomaskelder
fixed: fixed in revision 1246 The cause of this was that the SelectionListeners?
12:24 Ticket #225 (Undo function breaks selection) closed by thomaskelder
fixed: fixed in revision 1246 The cause of this was that the SelectionListeners?
12:23 Changeset [1246] by thomas
fixed #225 and #232 (related to actions that get disabled after undo)
12:20 Ticket #232 (Unable to delete objects after undo) created by thomaskelder
After undo is pressed, it is impossible to delete an object ADDITIONAL …
11:45 Ticket #228 (Comments entered in the DataNode properties window disappear unless ...) closed by thomaskelder
fixed: committed in revision 1245 The cell editor didn't lose focus when the ok …
11:43 Changeset [1245] by thomas
fixed bug #228
11:20 Ticket #230 (Comments window not working: not possible to type in coments (Windows XP)) closed by thomaskelder
fixed: Fix committed in revision 1244
11:19 Changeset [1244] by thomas
- fixed #230 (comments dialog not working under WinXP)
11:19 Ticket #231 (Canvas size is not adjusted to zoom) closed by thomaskelder
fixed: fixed committed in revision 1243
10:52 Changeset [1243] by thomas
- fixed bug #231 (canvas size doesn't adjust to zoom)
10:49 Ticket #231 (Canvas size is not adjusted to zoom) created by thomaskelder
When zoomin in/out, the scrollbars do not adjust themselves to the new …
00:03 Ticket #230 (Comments window not working: not possible to type in coments (Windows XP)) created by KristinaHanspers
The Comments window of objects is not working. After clicking "Add …

09/05/07:

22:52 Ticket #229 (Literature tab of DataNode properties: Text in References list is cutoff) created by KristinaHanspers
Literature tab of DataNode? properties: Text in References list is cutoff. …
22:48 Ticket #228 (Comments entered in the DataNode properties window disappear unless ...) created by KristinaHanspers
Try this: - Double-click on Comments field to open DataNode? properties …
21:47 Ticket #227 (Undo doesn't work for changes made in the Properties panel) created by KristinaHanspers
Undo doesn't work for changes made in the Properties panel: -color …
21:44 Ticket #226 (Setting transparency to true also changes fill color to white instead of ...) created by KristinaHanspers
Setting transparency to true also changes fill color to white instead of …
21:32 Ticket #225 (Undo function breaks selection) created by KristinaHanspers
The Undo feature in the Applet seems to affect selection. After Undo, the …
21:03 Ticket #224 (Resizing applet results in blank pathway until resized to larger size) created by KristinaHanspers
This is a little difficult to explain, this is what I did: -Select Edit …
20:51 Ticket #203 (Implement align for all objects including lines and groups, and include ...) closed by KristinaHanspers
fixed: This was solved by Thomas by implementing getVShape(boolean rotate).
20:47 Ticket #181 (Nudge without Ctrl) closed by KristinaHanspers
fixed
10:18 Changeset [1242] by thomas
made shaperegistry public (for use in Cytoscape plugin) made change to …
10:07 Changeset [1241] by martijn
Release Candidate 3
10:06 Changeset [1240] by martijn
Release branch (for rc3 and final release)

09/04/07:

16:35 Changeset [1239] by thomas
added undo button to toolbar in swt version
16:26 Changeset [1238] by thomas
added undo/redo icons added undo action to toolbar in swing version
16:25 Changeset [1237] by martijn
Removed debugging print Bumped version no to release candidate 3
15:54 Changeset [1236] by thomas
fixed bug in label outline (not fully drawn)
13:26 Changeset [1235] by thomas
gene database now handles old and new database schema versions
12:02 Changeset [1234] by martijn
Simple script to run converter
08:36 Ticket #223 (Issues with Groups and the Selection Box) created by AlexanderPico
(1) When a group is selected along with another element, only the group …
00:47 Changeset [1233] by alex
removed debugging print statement
00:45 Changeset [1232] by alex
fixed vIntersects() for groups and refactored methods
00:44 Changeset [1231] by alex
added special case for selection groups by dragging

09/03/07:

16:04 Changeset [1230] by thomas
worked on #222
15:50 Ticket #112 (digit symbol sensitivity when exporting mapp) closed by martijn
fixed: Fixed. Importing / exporting works fine with comma-numbers. I managed to …
15:50 Changeset [1229] by martijn
Fixed issue #112: digit symbol sensitivity
14:09 Ticket #209 (pasting twice leads to overlapping objects) closed by thomaskelder
fixed: PathwayImportHandler? now keeps track of how many times the pasted objects …
14:08 Changeset [1228] by thomas
fixed #209
12:51 Ticket #127 (pathway-title length is not checked in property panel) closed by martijn
fixed: Length is now silently capped at 50
12:50 Changeset [1227] by martijn
Fixed #127 (Pathway title length cap at 50)
12:30 Ticket #62 (Backpage isn't updated after entering an Xref / Datasource, only when ...) closed by thomaskelder
fixed: backpage now listens for gpmlModified events on the selected DataNode?
12:30 Ticket #210 (Can't open dialog on Color property when "multiple values") closed by thomaskelder
fixed
12:29 Ticket #208 (SWTException: Device is disposed) closed by thomaskelder
fixed: Checked if widget is disposed in the method where this exception is …
12:28 Changeset [1226] by thomas
fixed #210 fixed #208 fixed bug in drawing order (after deleting an …
10:05 Changeset [1225] by thomas
- added some javadoc - refactored action handling in Swing MainPanel?

09/02/07:

11:15 Changeset [1224] by martijn
Limit on Undo queue, to curb memory usage
09:31 Ticket #165 (selecting a group doesn't behave correctly with nested groups) closed by AlexanderPico
fixed: Selection of nested groups now works properly
09:30 Changeset [1223] by alex
commented out print statements
09:29 Changeset [1222] by alex
bug #165 fixed: proper selection of nested groups
01:51 Changeset [1221] by alex
group nesting bug fixed: any combination of nested groups can now be …

09/01/07:

23:55 Changeset [1220] by alex
bug #188 fixed
23:54 Ticket #188 (Unused groups are never deleted) closed by AlexanderPico
fixed
22:33 Changeset [1219] by alex
replaced deprecated getGmmlData() with getPathwayElement()
22:27 Changeset [1218] by alex
replaced deprecated getGmmlData() with getPathwayElement()

08/31/07:

18:32 Ticket #218 (Undo: property changes not registered as undo actions) closed by martijn
fixed
18:32 Ticket #214 (Pathway info is not marked dirty) closed by martijn
fixed
18:32 Changeset [1217] by martijn
Fixed #218 (Undo for changes in property panel) Fixed #214 (Mark InfoBox?
18:29 Ticket #222 (Exception when exporting empty pathway via batik) created by martijn
How to reproduce: create a new pathway export it to e.g. svg or png The …
16:31 Ticket #221 (moving a group that includes linked lines doesn't work properly) created by thomaskelder
When a group includes lines that are linked to another object in the …
16:28 Changeset [1216] by thomas
added function to display literature references from GPML to pathway info
16:05 Changeset [1215] by thomas
fixed #62 fixed small bug in enabling/disabling toolbar actions fixed …
15:43 Ticket #220 (Daily webstart doesn't work) closed by thomaskelder
fixed
13:49 Changeset [1214] by martijn
Fixed gpmldiff build error
13:45 Ticket #213 (Toolbars don't get stacked properly when they are just created.) closed by martijn
fixed
13:45 Changeset [1213] by martijn
fixed #213 (toolbar layout)
11:40 Changeset [1212] by thomas
fixed junit test for literature references
11:27 Changeset [1211] by thomas
fixed small bug in authors list of literature references
11:22 Changeset [1210] by thomas
removed not used libraries from jnlps
11:17 Changeset [1209] by thomas
removed eclipse keys from jars

08/30/07:

21:42 Ticket #220 (Daily webstart doesn't work) created by martijn
(go to pathvisio.org, developers section, daily, daily webstart for …
21:33 Changeset [1208] by martijn
fixed #216 (align toolbar doesn't appear always on edit mode)
21:33 Ticket #216 (New Objects toolbar but not Align actions toolbar appear when opening ...) closed by martijn
fixed
17:16 Changeset [1207] by thomas
worked on #62
16:54 Ticket #212 (Selection box outline is not adjusted after zoom) closed by thomaskelder
fixed: selectionbox stored view coordinates directly, after zooming they became …
16:53 Ticket #219 (Selection box suddenly shifts when resizing it) closed by thomaskelder
fixed: Disabled resizing of selectionbox. This isn't a useful feature at all for …
16:51 Changeset [1206] by thomas
simplified selectionbox by disabling simultaneous resize (which fixed …
15:02 Changeset [1205] by thomas
disabled redundant stack/align functions on toolbar again
14:59 Changeset [1204] by thomas
fixes for rounding error in stack/align
14:47 Changeset [1203] by thomas
- disabled tooltip support in VPathway for 1.0 release
14:18 Ticket #211 (VPathway doesn't get focus again after using zoom combo) closed by thomaskelder
fixed: Used CCombo instead of Combo, CCombo only takes focus when clicking text
14:17 Changeset [1202] by thomas
solved #211 (replaced Combo by CCombo)
13:46 Changeset [1201] by thomas
accidentally checked in new stack/align code (eclipse didn't look at my …
13:36 Changeset [1200] by thomas
- fixed bug in backpage query that caused 100% CPU load - fixed bug in …
11:59 Ticket #219 (Selection box suddenly shifts when resizing it) created by thomaskelder
When you resize multiple objects with the selectionbox, the handle shifts …
11:09 Ticket #218 (Undo: property changes not registered as undo actions) created by martijn
If you change anything in the property panel, you can't undo that action …
10:51 Ticket #217 (Request: Line-wrapping for labels) created by martijn
If you want to have a multi-line label, right now you have to insert …
10:37 Ticket #216 (New Objects toolbar but not Align actions toolbar appear when opening ...) created by martijn
Start pathvisio open any pathway See that the application does not switch …
10:01 Ticket #215 (Model should know about rotated shapes) created by martijn
The model should know about the size of a shape after rotation. I think we …
09:57 Ticket #214 (Pathway info is not marked dirty) created by martijn
When changing anything in the Pathway info, display of the info in the …
09:54 Ticket #213 (Toolbars don't get stacked properly when they are just created.) created by martijn
When opening a new pathway, two new toolbars appear: new objects and align …
09:46 Ticket #212 (Selection box outline is not adjusted after zoom) created by thomaskelder
When you have selected multiple objects and then zoom in/out, the …

08/29/07:

21:04 Ticket #211 (VPathway doesn't get focus again after using zoom combo) created by thomaskelder
After zooming in and out, the keyboard focus retains on the zoom combo and …
15:19 Changeset [1199] by thomas
disabled suggest cell editor for 1.0 release
15:13 Changeset [1198] by thomas
- improved selection speed of gene products - worked on SuggestCellEditor?
15:00 Changeset [1197] by martijn
Fixed issue #164 (Undo broken)
14:59 Ticket #164 (Propertypanel breaks after undo) closed by martijn
fixed: It works now.
14:54 Ticket #210 (Can't open dialog on Color property when "multiple values") created by martijn
If you've selected two items of the same type that have the same color, …
14:35 Ticket #209 (pasting twice leads to overlapping objects) created by martijn
Copy an Object paste -> observe that it is shifted a little to prevent …
14:04 Ticket #208 (SWTException: Device is disposed) created by martijn
Sometimes a Device is disposed event occurs in the SWT version, when …
12:25 Changeset [1196] by thomas
updated eclipse jars to 3.3
11:49 Ticket #207 (autofill feature for datanode ids (suggest) doesn't work anymore on ...) created by thomaskelder
Since the update of swt to version 3.3 the combo with suggestions for …
10:25 Changeset [1195] by thomas
fixed compile error
03:07 Changeset [1194] by alex
debugging lines
02:48 Changeset [1193] by kristina
Added KeyMoveAction? class in ViewActions? Added getV*Rot methods in …

08/28/07:

14:04 Changeset [1192] by thomas
added licence headers
13:47 Changeset [1191] by thomas
added licence headers
13:47 Changeset [1190] by thomas
added licence headers
12:53 Ticket #187 (Remember last opened directory) closed by martijn
fixed: Now remembers last opened / saved directory for pathways. Not for gex and …
12:52 Changeset [1189] by martijn
Implemented #187
12:11 Ticket #206 (Drawing board flickers when new objects are placed outside of bounds of ...) closed by thomaskelder
fixed: This was introduced by the automatic drawingboard resizing. VPathwaySwing …
12:10 Changeset [1188] by thomas
fixed #206 (drawingboard flickers)
11:54 Changeset [1187] by thomas
removed redundancy in backpage panel code
11:51 Changeset [1186] by thomas
fixed biopax junit test error added junit test for copy/paste
10:06 Ticket #175 (snap to angle) closed by martijn
fixed
10:05 Ticket #174 (preference for enabling MIM, GenMAPP shapes) closed by martijn
fixed
10:05 Changeset [1185] by martijn
implemented #175 (snap to angle) implemented #174 (MIM Support preference)
03:33 Ticket #188 (Unused groups are never deleted) closed by AlexanderPico
fixed
03:16 Changeset [1184] by alex
used removeGroupId(PE) when ungrouping
03:15 Changeset [1183] by alex
added removeGroupId method
02:14 Ticket #206 (Drawing board flickers when new objects are placed outside of bounds of ...) created by KristinaHanspers
- Open blank pathway - Place any object on the drawing board => causes the …

08/27/07:

22:06 Changeset [1182] by thomas
modified output for index test removed class files I accidentally added

08/26/07:

23:28 Ticket #205 (Open pathway from the command line) created by martijn
It would be nice if you could open a pathway from the command line. For …

08/25/07:

18:06 Changeset [1181] by thomas
17:18 Changeset [1180] by thomas
added index tester script commented out code that caused compile error (in …
10:46 Changeset [1179] by thomas
minor bug fix; corrected returned name
10:42 Changeset [1178] by thomas
minor fixes
10:39 Changeset [1177] by thomas
minor
10:24 Changeset [1176] by thomas
fix to custom special page directories
10:23 Changeset [1175] by thomas
updated for browse pathways page
10:16 Changeset [1174] by thomas
Second directory of most viewed pathways page (first copy is screwed up in …
10:14 Changeset [1173] by thomas
Second directory for browse pathways page (first is screwed up with svn)
10:10 Changeset [1172] by thomas
update browse page

08/24/07:

18:59 Changeset [1171] by thomas
fixed #119
18:58 Ticket #119 (Directory Preferences) closed by thomaskelder
Bug 1: If you clear the fields, the preferences suddenly become valid This …
17:32 Ticket #178 (Version Checker with popup dialog) closed by thomaskelder
fixed
17:32 Ticket #195 (unable to save pathway after importing it) closed by thomaskelder
17:30 Changeset [1170] by thomas
signed updated swt jars
17:28 Changeset [1169] by thomas
- updated swt libraries - fixed regression bug in help - fixed #204, #159
17:22 Ticket #159 (problematic error message when opening corrupt .mapp) closed by thomaskelder
17:21 Ticket #204 (Exporting to SVG or PDF doesn't work anymore) closed by thomaskelder
fixed
15:11 Ticket #80 (Can't copy from clipboard to Properties fields in PV) closed by thomaskelder
fixed
15:10 Changeset [1168] by thomas
- fixed bug in setting drawing board size on opening pathway - fixed bug …
13:55 Ticket #204 (Exporting to SVG or PDF doesn't work anymore) created by martijn
When I try to export Hs_Apoptosis_plus to PNG, I get this exception: …
13:48 Ticket #183 (asterisk in title bar to indicate change status) closed by martijn
fixed: Done.
13:47 Ticket #167 (Feature request: Automatically set the transparency to "false" when user ...) closed by martijn
Internally, the transparency and fill color are now one variable. The …
13:42 Changeset [1167] by martijn
implemented #167 (fillColor and transparency merged in one) implemented …
13:28 Ticket #170 (Sign jars only when they have changed) closed by thomaskelder
fixed
13:26 Ticket #190 (valid certificate) closed by thomaskelder
obtained Thawte Freemail certificate.
13:26 Changeset [1166] by thomas
fixed bug #190 and #170
11:58 Ticket #182 (remove edit mode button) closed by thomaskelder
11:58 Ticket #74 (Shouldn't be able to delete objects or edit properties when not in edit ...) closed by thomaskelder
11:58 Ticket #120 (Scrollspeed) closed by thomaskelder
11:58 Changeset [1165] by thomas
- fixed 182, 74, 120

08/23/07:

19:54 Ticket #203 (Implement align for all objects including lines and groups, and include ...) created by KristinaHanspers
Implement align for all objects including lines and groups, and include …
16:22 Ticket #180 (Global copy/paste) closed by thomaskelder
fixed
16:21 Changeset [1164] by thomas
fixed #180 (finally)
15:26 Ticket #202 (Data-Source attribute of Pathway is always "GenMAPP 2.0") closed by thomaskelder
15:25 Ticket #189 (Several keyboard mappings are broken in applet) closed by thomaskelder
15:25 Ticket #191 (progress dialogs too small) closed by thomaskelder
15:25 Ticket #192 (Can not copy in read-only mode) closed by thomaskelder
15:25 Ticket #193 (Several changes can be made in read-only mode) closed by thomaskelder
15:25 Changeset [1163] by thomas
fixed #191, #192, #193, #189, #202 worked on global copy/paste
14:07 Ticket #202 (Data-Source attribute of Pathway is always "GenMAPP 2.0") created by thomaskelder
Whatever you set for the property 'Data-Source', the xml output will …
13:02 Ticket #171 (double arrow heads) closed by martijn
To solve the issue with the Head attribute being on the wrong point, a new …
13:01 Ticket #196 (Stroked Shapes) closed by martijn
fixed
13:01 Ticket #198 (Rectangles around labels) closed by martijn
fixed
13:01 Ticket #168 (GenMAPP Shapes: Coloring OrganC (ring) results in filled circle (like ...) closed by martijn
fixed
13:00 Changeset [1162] by martijn
Fixed #168: Coloring OrganC Fixed #198: Outlined Labels Fixed #196: …

08/22/07:

20:35 Changeset [1161] by thomas
updated for BrowsePathwaysPage?
20:34 Changeset [1160] by thomas
updated for BrowsePathwaysPage?
20:20 Changeset [1159] by thomas
Cloned method for 3-column display, to provide a headerless version
16:37 Changeset [1158] by thomas
worked on copy/paste started update notification
15:55 Ticket #201 (No good place for log in swing version) created by martijn
When starting the swing version, it fails to set the log stream: …
12:22 Ticket #173 (Preference for rounded rects on dataNodes) closed by thomaskelder
fixed: see preference in: preferences -> display -> use rounded rectangles for …
12:21 Changeset [1157] by thomas
fixed compilation errors
12:12 Changeset [1156] by thomas
- fixed bug #173 - improved VPathway resize (not updated every time an …
10:22 Ticket #169 (GenMAPP Shapes: Some shape types are invisible in webstart) closed by martijn
10:03 Changeset [1155] by martijn
Fixed gpmldiff test problems
10:01 Ticket #200 (dgpml can't handle changes to mappinfo object) created by martijn
If you do gpmldiff with output set to dgpml, you get an exception when a …

08/21/07:

20:39 Changeset [1154] by martijn
Fixed #197 (mim shapes and arrows) Fixed #172 (any Shape for arrow heads)
20:37 Ticket #172 (Any shape for arrow heads) closed by martijn
fixed
20:34 Ticket #197 (MIM Shapes & Arrowheads) closed by martijn
fixed
17:19 Ticket #199 (shape strokes are drawn below fill) closed by martijn
fixed
17:18 Changeset [1153] by martijn
Forgot to commit two files
17:17 Changeset [1152] by martijn
Fixed #199 (draw fill before stroke) Worked on #197 and #172 (MIM Shapes …
16:14 Changeset [1151] by thomas
started with fix for tooltips
12:10 Ticket #177 (Increase drawingboard size when object is moved out of board boundaries) closed by thomaskelder
fixed
12:09 Ticket #186 (z-order should be defined for all objects) closed by thomaskelder
fixed: didn't change GPML to contain a z-order attribute. The z-order is stored …
12:09 Changeset [1150] by thomas
- fixed bug in label plugin - fixed bugs #177 and #186 - added base …
11:12 Ticket #199 (shape strokes are drawn below fill) created by thomaskelder
Since the introduction of the new shapes, the stroke is drawn below the …
11:06 Changeset [1149] by thomas
changed plugin loader, plugins need to be in …

08/20/07:

16:27 Changeset [1148] by thomas
removed old wikipathways branch
15:46 Changeset [1147] by thomas
removed todo.tab, replaced by bug tracker and wiki Roadmap page
15:42 Ticket #198 (Rectangles around labels) created by martijn
For MIM Compatibility Requires GPML Update
15:41 Ticket #197 (MIM Shapes & Arrowheads) created by martijn
See List on Paper
15:40 Ticket #196 (Stroked Shapes) created by martijn
Make it possible to have stroked shapes - for MIM compatibility GPML …
15:36 Ticket #39 (Only way to change drawing area is by editing properties "boardWidth, ...) closed by thomaskelder
duplicate: see #177
15:23 Ticket #195 (unable to save pathway after importing it) created by thomaskelder
After importing a pathway from a mapp file, if you save it again, the …
15:19 Ticket #109 (When setting fill color in property panel, transparency should be set to ...) closed by martijn
15:19 Ticket #86 (FEATURE SUGGESTION: Add double-sided arrow to drawing tools) closed by martijn
15:16 Ticket #194 (Factor out pathvisio-core.jar) created by martijn
Restructure build file to allow independent compilation of …
15:02 Ticket #193 (Several changes can be made in read-only mode) created by thomaskelder
Users can group/ungroup, and change annotation for genes (via dialog)
15:01 Ticket #192 (Can not copy in read-only mode) created by thomaskelder
The copy button is disabled in read only mode
15:01 Ticket #191 (progress dialogs too small) created by thomaskelder
The progress dialogs indication progress of loading/saving pathways are …
14:59 Ticket #190 (valid certificate) created by thomaskelder
We should get a valid certificate for the PathVisio/WikiPathways? project
14:58 Ticket #189 (Several keyboard mappings are broken in applet) created by thomaskelder
Several keyboard mappings are broken in applet: delete group copy paste
14:52 Ticket #11 (Handles are drawn below brace and eclipse after resizing, also causes ...) closed by martijn
fixed
14:51 Ticket #20 (bottom line of gene products may disappear when slowly scrolling up.) closed by martijn
fixed: Not observed since Graphics2D implementation
14:49 Ticket #43 (Gmml-Visio doesn't run out of the box on linux. Complicated setup needed ...) closed by thomaskelder
wontfix: Unable to solve, this is an SWT issue. Our solution is a workaround by …
14:36 Ticket #85 (FEATURE SUGGESTION: In Preferences>Directories, add option for Import ...) closed by martijn
wontfix: We'll let the import dialog remember the last opened directory instead.
14:22 Ticket #116 (Unable to save pathway after deleting an object that has linked lines) closed by thomaskelder
fixed
14:14 Ticket #122 (FEATURE: data recovery) closed by thomaskelder
fixed: current solution is good enough
14:09 Ticket #137 (VPathway depends on Swing by using Action for keybindings) closed by martijn
13:14 Ticket #188 (Unused groups are never deleted) created by martijn
If a group of objects is un-grouped, and the pathway is saved, there is …
12:58 Ticket #187 (Remember last opened directory) created by martijn
Right now, the default directory is reset to the preference each time you …
12:53 Ticket #148 (Need to expose z-order property to UI) closed by thomaskelder
fixed: Seperated into two bugs: 185 …
12:53 Ticket #186 (z-order should be defined for all objects) created by thomaskelder
Currently the z-order for shapes of the same type is not defined. This …
12:52 Ticket #185 (User interface to change z-ordering of objects) created by thomaskelder
We should display the z-order as an object property so that users can view …
12:36 Ticket #184 (Click through transparent shape) created by martijn
If you create a transparent circle, you should not be able to click in the …
12:15 Ticket #183 (asterisk in title bar to indicate change status) created by martijn
The asterisk in the title bar of PathVisio should indicate the change …
12:15 Ticket #182 (remove edit mode button) created by thomaskelder
The edit button should be removed in the 1.0 version (since you can only …
12:05 Ticket #181 (Nudge without Ctrl) created by martijn
Nudging objects works with Ctrl + cursor key. It's probably more intuitive …
11:52 Ticket #180 (Global copy/paste) created by thomaskelder
Copy and paste should work via system clipboard, so you can copy/paste …
11:47 Ticket #179 (Clickable installer for mac) created by martijn
Test & Release
11:37 Ticket #178 (Version Checker with popup dialog) created by martijn
mainly for mac version, since we can't provide webstart on the mac.
11:19 Ticket #177 (Increase drawingboard size when object is moved out of board boundaries) created by thomaskelder
The drawingboard size should be increased when an object is moved out of …
11:18 Ticket #176 (Scroll when dragging an object out of view) created by martijn
When dragging an object out of view, the view should scroll a little. …
11:13 Ticket #175 (snap to angle) created by martijn
Also add preference. The default is 15 degrees increments.
11:10 Ticket #174 (preference for enabling MIM, GenMAPP shapes) created by martijn
Add two boolean preferences: one for allowing MIM Shapes, one for allowing …
11:03 Ticket #173 (Preference for rounded rects on dataNodes) created by martijn
MIM's usually display proteins with rounded rects. Making a program-wide …
10:58 Ticket #172 (Any shape for arrow heads) created by martijn
Create second instance of shape registry for arrow heads. Make sure …
10:55 Ticket #171 (double arrow heads) created by martijn
Implement lines with double arrow heads Note: at this moment the …
10:48 Ticket #170 (Sign jars only when they have changed) created by martijn
Right now, even with a very small change, all jars are signed again even …

08/18/07:

15:26 Changeset [1146] by martijn
Fixed sticky edges (they didn't work since r1117)
02:16 Ticket #169 (GenMAPP Shapes: Some shape types are invisible in webstart) created by KristinaHanspers
PathVisio webstart: After selecting a particular shape, like ribosome, …
02:05 Ticket #168 (GenMAPP Shapes: Coloring OrganC (ring) results in filled circle (like ...) created by KristinaHanspers
GenMAPP Shapes: Coloring OrganC (ring) results in filled circle (like …
01:11 Ticket #167 (Feature request: Automatically set the transparency to "false" when user ...) created by KristinaHanspers
Feature request: Automatically set the transparency to "false" when user …

08/17/07:

19:16 Changeset [1145] by martijn
Various improvements to the DiffView? applet
17:08 Changeset [1144] by thomas
removed tiff exporter from wikipathways version
16:21 Changeset [1143] by thomas
- fixed bug in pubmed query (double last author) - fixed wrong common …
15:10 Ticket #166 (unable to export pathway to tiff over XML-RPC) created by thomaskelder
Exporting a pathway to tiff using the xml_rpc exporter gives the following …
13:44 Changeset [1142] by thomas
added cache version file
13:42 Changeset [1141] by thomas
fixed bug in sitemap script added jar caching to applet
13:41 Changeset [1140] by thomas
adjusted buildfile to write wikipathways classpath for applet
12:53 Ticket #165 (selecting a group doesn't behave correctly with nested groups) created by thomaskelder
If a group is nested in another group, selecting an element that is in …
12:21 Changeset [1139] by thomas
updated error message on startup in applet

08/16/07:

17:41 Changeset [1138] by thomas
fixed bugs in applet
17:02 Changeset [1137] by martijn
Diff viewer now draws lines to indicate which objects pair up. Tweaked …
14:06 Changeset [1136] by thomas
fixed xml output on copy to be a valid document
10:31 Changeset [1135] by thomas
- added gpml file drop support for swing version - added gpml …

08/15/07:

22:16 Changeset [1134] by martijn
gpmldiff: - added hints to diff viewer - added option to print similarity …
15:36 Changeset [1133] by thomas
fixed year value in pubmed query
15:28 Changeset [1132] by thomas
fixed dependency on batik for applet
14:59 Changeset [1131] by thomas
added button to query pubmed for literature references
13:39 Changeset [1130] by thomas
- added xml-rpc converters for wikipathways - added progressbar for …
13:33 Changeset [1129] by thomas
added xml-rpc method for pathway conversion
Note: See TracTimeline for information about the timeline view.