Timeline


and .

07/30/10: Yesterday

20:02 Ticket #1237 (ClassCastException when editing a pathway for the 2nd time) created by martijn
How to reproduce: * Start firefox * Go to a pathway page and click the …
19:33 Milestone milestone_25 completed
19:33 Ticket #1236 ("WikiPathways" not showing up in DataSource drop-down) closed by martijn
fixed
17:35 ReleaseNotes edited by martijn
(diff)
17:34 ReleaseNotes edited by martijn
(diff)
17:28 WikiStart edited by martijn
(diff)
17:27 PathVisioDownload edited by martijn
(diff)
16:57 Changeset [3266] by martijn
Update version no
16:56 Changeset [3265] by martijn
Point release to fix version no
16:55 Changeset [3264] by martijn
Update version no
16:52 Changeset [3263] by martijn
Milestone 25 tag
16:51 Changeset [3262] by martijn
Milestone 25 release branch
12:18 Ticket #1235 (Make datasource dropdown sensitive to datanode type.) closed by martijn
fixed: Fixed.
12:17 Ticket #1220 (No Ensembl links for pig) closed by martijn
fixed: Should be fixed now.
12:07 Changeset [3261] by martijn
Remove problematic @Overrides
12:05 Changeset [3260] by martijn
Update to bridgedb v1.0.2
10:44 Changeset [3259] by martijn
Remove debugging code
10:31 Ticket #1217 (Entering newlines on node text labels) closed by martijn
fixed: I turned the field for a textlabel from a JTextField into a JTextArea, so …
10:29 Changeset [3258] by martijn
Added license headers
10:29 Changeset [3257] by martijn
Allow multi-line textlabels in DataNodeDialog? (fixes #1217)
10:29 Changeset [3256] by martijn
Add DataNodeType? combo to DataNodeDialog?
10:29 Changeset [3255] by martijn
Fixes #1235: Make DataSourceHandler? sensitive to the DataNodeType? context

07/29/10:

15:20 Changeset [3254] by thomas
changed ID to Identifier in txt exporter (should fix #1197)
14:28 Ticket #1197 (Exported gene list doesn not easily load in MS Excel) closed by thomaskelder
fixed: Changed "ID" to "Identifier". Should be fixed now, but can't test because …
14:23 Ticket #1126 (Duplications in Bibliography when two datanodes have the same lit ref) closed by thomaskelder
fixed

07/28/10:

21:24 Ticket #1236 ("WikiPathways" not showing up in DataSource drop-down) created by martijn
The DataSource? drop-down should list WikiPathways? itself as a possible …
21:23 Ticket #1235 (Make datasource dropdown sensitive to datanode type.) created by martijn
For example, when datanode type is Metabolite, HMDB ChEBI etc. should show …
21:23 Ticket #1195 (Linking to entrez gene) closed by AlexanderPico
wontfix: This is a known problem with the data sources that maintain the various …
21:14 Ticket #1202 (Not possible to change the size of a receptor or ligand when drawing in ...) closed by martijn
duplicate: Duplicate of #1194
21:06 Ticket #1196 (Periodical save should not start after user already started a regular save) closed by AlexanderPico
duplicate
20:47 Ticket #1206 (SecurityException when saving pathway) closed by AlexanderPico
worksforme
19:52 DevMeetings edited by AlexanderPico
(diff)
19:32 DevMeetings edited by martijn
(diff)

07/27/10:

14:40 Changeset [3253] by martijn
use the terms "MIM shapes" and "MIM interactions"
14:40 Changeset [3252] by martijn
update some icons (change background to transparent)
14:40 Changeset [3251] by martijn
programmatic hook for user to add new shapes to the side-bar tab
14:40 Changeset [3250] by martijn
1. change the title of the side-bar tab from "Items" to "Objects" 2. …
14:40 Changeset [3249] by martijn
add a new tab in the sidebar with all the shapes
14:40 Changeset [3248] by martijn
1. remove "arc", "brace", "tbar", "receptor/ligand", add "arrow" 2. …
14:40 Changeset [3247] by martijn
pressing Shift can reserve the width-height ratio during dragging the …
14:40 Changeset [3246] by martijn
TestDropDown? plugin
14:40 Changeset [3245] by martijn
remove tag '//lb', fix the bug of 'buttons stay selected'
14:40 Changeset [3244] by martijn
Merged trunk r3191:3195 into gsoc-liubing
14:40 Changeset [3243] by martijn
ticket #1181: Office-like toolbar
14:40 Changeset [3242] by martijn
14:40 Changeset [3241] by martijn
30 icons are added
14:40 Changeset [3240] by martijn
test

07/26/10:

23:09 Ticket #1234 (single quotes in discussion thread titles causes parsing error in "Latest ...) closed by AlexanderPico
fixed: fixed by replacing single quotes with pairs of single quotes in query …
14:54 Changeset [3239] by liubing

07/25/10:

20:20 Ticket #1234 (single quotes in discussion thread titles causes parsing error in "Latest ...) created by AlexanderPico
The main page of wikipathways is vulnerable to discussion thread titles …

07/24/10:

00:00 Changeset [3238] by KristinaHanspers
Parser for PV html exports to MediaWiki? ImageMap? format, with links to …

07/23/10:

11:28 Ticket #1232 (Is it possbile to "autocreate" a blank pahway from expression data) closed by martijn
duplicate: Duplicate of #1233
11:27 Ticket #1233 (Is it possbile to "autocreate" a blank pahway from expression data) closed by martijn
wontfix: P.S. I'm closing this ticket, we'll handle the rest by email.

07/22/10:

19:12 Changeset [3237] by KristinaHanspers
- Changed maplinks from labels to datanodes - Fixed multiple labels for …
18:53 Ticket #1228 (SegmentedConnectorShape) closed by thomaskelder
fixed: I've applied it to the trunk, it will be included in the next release. …
18:52 Changeset [3236] by thomas
- free segment connector (modified patch by leon)
15:45 Ticket #1233 (Is it possbile to "autocreate" a blank pahway from expression data) created by lareooreal
Dear all! Genmapp has the nice property to be able to autocreate a …
15:45 Ticket #1232 (Is it possbile to "autocreate" a blank pahway from expression data) created by lareooreal
Dear all! Genmapp has the nice propoerty to be able to autocreate a …
15:41 Ticket #1231 (Pathway files (gpml and mapps) behave somehow differently) created by lareooreal
Dear all! I encounter a problem that make imported mapp files form …

07/21/10:

16:55 Changeset [3235] by martijn
Extra FileUtils? method for replacing an extension

07/20/10:

19:56 Changeset [3234] by liubing
1. update "positioning pathway during scroll-wheel zooming" 2. panning …

07/19/10:

12:28 Ticket #1225 (NullPointerException when opening GPML files with custom ConnectorType) closed by thomaskelder
fixed
12:28 Changeset [3233] by thomas
fixed #1225
08:57 Ticket #1230 (Allow to open pathway by identifier in the Cytoscape plugins) created by thomaskelder
In the GPML and superpathways plugin, you can search for pathways by name. …
08:56 Ticket #1229 (Show pathway identifier somewhere on page) created by thomaskelder
It would be handy to show the pathway identifier somewhere on the pathway …

07/16/10:

20:33 Ticket #1228 (SegmentedConnectorShape) created by leonth
Hi, I've implemented a new connectorShape that can have multiple …

07/15/10:

16:12 Changeset [3232] by liubing
Keep relative position while zooming

07/13/10:

15:42 Ticket #1227 (Entrez LinkOut support for wikipathways) created by thomaskelder
It would be nice to add wikipathways to the LinkOut? section of Entrez …

07/12/10:

23:01 Ticket #1226 (Pathway panning with middle mouse button) created by KristinaHanspers
Adding panning with the middle mouse button as a feature was suggested by …
22:58 Ticket #1212 (Allow user to upload their own images to denote species) closed by KristinaHanspers
wontfix: I am going to close this ticket since it will require non-trivial changes …
17:31 Ticket #1225 (NullPointerException when opening GPML files with custom ConnectorType) created by leonth
I tried changing '<Graphics ConnectorType?="Elbow" ...' to '<Graphics …

07/10/10:

19:59 Changeset [3231] by liubing
fix the negative zooming bug (ticket #1224) in version 3230
19:51 Changeset [3230] by liubing
use the terms "MIM shapes" and "MIM interactions"
19:49 Changeset [3229] by liubing
update some icons (change background to transparent)

07/09/10:

14:19 Changeset [3228] by thomas
fixed compiler error in superpathways plugin
13:31 Changeset [3227] by thomas
fixed #1223
13:30 Changeset [3226] by thomas
fixed #1223
12:29 Ticket #1223 (superpathways pluging for cytoscape) closed by thomaskelder
fixed: Fixed jar submitted to Cytoscape plugin repository (v1.2).
01:37 Ticket #1224 (Negative zoom allowed => pathway is displayed inverted) created by KristinaHanspers
Using the scroll-zoom feature (by Bing for GSoC) or by typing in a …

07/08/10:

03:34 Changeset [3225] by AlexanderPico
updated bridgedb jars, adding Gene Wiki support

07/07/10:

19:59 DevMeetings edited by martijn
(diff)
19:39 DevMeetings edited by martijn
(diff)
19:37 DevMeetings edited by martijn
(diff)
19:32 DevMeetings edited by martijn
(diff)

07/06/10:

13:37 Ticket #1223 (superpathways pluging for cytoscape) created by kmezhoud
Hello, I would like find related pathways from wikipathways. How can I …

07/05/10:

12:13 Ticket #1222 (Unused PublicationXref) created by martijn
In GPML.xsd, there is an element "PublicationXref?" in the xsd group …

07/03/10:

11:12 Changeset [3224] by liubing
ticket #1185 - zoom with scrollwheel
11:11 Changeset [3223] by liubing
programmatic hook for user to add new shapes to the side-bar tab
11:10 Changeset [3222] by liubing
1. change the title of the side-bar tab from "Items" to "Objects" 2. …

07/02/10:

09:45 Ticket #1221 (Start using datanodes instead of labels to point to another pathway) created by thomaskelder
It would be beneficial for several use cases to start using datanodes to …
Note: See TracTimeline for information about the timeline view.