{9} Active tickets by component (260 matches)

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Cytoscape plugin (5 matches)

Ticket Summary Severity Milestone Owner Status Created
#964 GPML Plugin and Unique IDs major AlexanderPico new 08/05/09
#778 z-order is ignored in cytoscape plugin minor thomaskelder new 01/22/09
#852 Documentation for Cytoscape plugin minor thomaskelder new 03/13/09
#1214 Cytoscape 2.7: plugin doesn't set correct visual style on loading GPML pathway minor thomaskelder new 06/18/10
#1230 Allow to open pathway by identifier in the Cytoscape plugins feature thomaskelder new 07/19/10

Diffviewer applet (6 matches)

Ticket Summary Severity Milestone Owner Status Created
#200 dgpml can't handle changes to mappinfo object minor martijn assigned 08/22/07
#382 Pathway diff does not work for unevenly sized pathways minor martijn assigned 03/07/08
#514 diffviewer: unchanged groups make changed elements below them unclickable. minor martijn assigned 05/14/08
#1111 DiffViewer error when comparing deleted pathway minor Milestone 26 martijn new 02/04/10
#412 Pathway History table and diffviewer on the same page feature martijn assigned 03/12/08
#455 DiffViewer: Add feature for viewing differences in Description and Category assignment feature martijn assigned 04/16/08

Documentation (1 match)

Ticket Summary Severity Milestone Owner Status Created
#965 RFC 012 - WikiPathways Roadmap feature AlexanderPico new 08/06/09

GeneDatabases (6 matches)

Ticket Summary Severity Milestone Owner Status Created
#942 PubChem SID vs CID minor martijn new 07/06/09
#1083 Valid database IDs not found through Search in applet minor AlexanderPico new 01/14/10
#1120 Problems with the Arabidopsis db minor AlexanderPico new 02/09/10
#851 Show GO term names in backpage cross-references list feature AlexanderPico new 03/12/09
#886 Supporting "other" species databases feature AlexanderPico new 04/19/09
#973 Database QC feature AlexanderPico assigned 08/12/09

Pathvisio (82 matches)

Ticket Summary Severity Milestone Owner Status Created
#843 PathVisio color set selection is too complicated major martijn new 02/23/09
#1098 Problems running PathVisio 2 on Windows major martijn new 01/26/10
#1145 Tickness arowhead major akshay.bhardwaj new 03/15/10
#1160 Bugs major martijn new 04/15/10
#1208 Blank lines in Expression Data give errors in PathVisio major Milestone 26 martijn new 06/08/10
#1218 Editing labels with newlines (
 / 
) major Milestone 26 martijn new 06/27/10
#266 PathVisio does not ask user to save pathway when shutting down windows minor thomaskelder assigned 11/02/07
#636 edit color set, recent colors minor martijn assigned 09/15/08
#680 Support for CSV minor martijn assigned 11/09/08
#796 Changing the font of the Data node label results in blurry labels minor martijn new 02/05/09
#937 Basic visualization is 'lost' while working minor martijn new 06/20/09
#984 DataNode values to the right of genes are truncated minor martijn new 08/28/09
#995 Pathway download should go via webstart minor martijn new 09/21/09
#1005 Displaying "Text label" (visualization options) creates overlapping labels on nodes minor martijn reopened 10/07/09
#1024 BiopaxRef as attribute or as element minor martijn new 10/27/09
#1027 Pasting objects with literature refs minor martijn new 10/28/09
#1040 Bug: ouroboros pathway leads to infinite recursion minor martijn new 11/17/09
#1047 Visualization Options: Scrolling causes parameters in "Select samples" in table to disappear minor martijn new 11/19/09
#1064 Comments on Legend Feature minor martijn new 12/30/09
#1065 BioPAXPlugin: better error on importing reactome / huge files minor martijn new 12/31/09
#1081 Cleanup LineType minor AlexanderPico assigned 01/14/10
#1095 "Show Advanced Properties" preference should take effect immediately minor AlexanderPico assigned 01/26/10
#1104 PathVisio: TIFF export does not work (exact same error as ticket 983) minor martijn new 01/28/10
#1121 GPML.xsd does not define a default line thickness minor martijn new 02/09/10
#1125 regression: wrong anchor position on curved lines minor Milestone 26 margot new 02/12/10
#1132 Moving expression set position causes loss of connection to advanced color set minor martijn new 03/02/10
#1134 Datanode with Entrez gene 54658 linked to 54575-54579 and 54657-54659 minor martijn new 03/03/10
#1149 Problems loading databases in PathVisio on Mac with non-english language settings minor martijn new 03/17/10
#1159 find better solution for MIMShapes.registerShapes() minor martijn new 04/02/10
#1207 GSoC, Shapes drop-down: buttons stay selected after clicking. minor liubing new 06/07/10
#1224 Negative zoom allowed => pathway is displayed inverted minor martijn new 07/09/10
#98 species selection feature martijn assigned 02/02/07
#114 FEATURE: printing. feature anonymous new 04/18/07
#136 Regression: Tooltips for visualization plugins are broken feature anonymous new 07/03/07
#265 autosave feature justin_elser new 11/02/07
#483 pv RFC 011 tracker bug feature thomaskelder assigned 04/16/08
#535 associate PathVisio with gpml files feature martijn assigned 05/29/08
#620 color gradient for non-symmetric data feature anonymous new 09/09/08
#637 copy from other color sets feature anonymous new 09/15/08
#710 Hyperlinks to other pathways feature martijn assigned 11/27/08
#725 Warn if pathway, gene database and expression dataset are not for the same species feature anonymous new 12/02/08
#750 I want to hide the infobox feature martijn new 12/16/08
#793 Feature: Make the minimum size for he Properties/Backpage/Search tab smaller feature martijn new 02/05/09
#794 Feature suggestion: Rename the option for "Text label" (under Vis Options) to "DataNode label" feature martijn new 02/05/09
#797 Feature: Suggested changes to Edit color set window under Expression as Color>Advanced feature martijn new 02/05/09
#803 Add more group types feature martijn new 02/06/09
#808 SBML compatibility & layout extension feature AlexanderPico new 02/09/09
#817 Feature: Use "text label" as default for gene box whenever a data visualization is used feature martijn assigned 02/10/09
#820 Feature: Create default color set based on criteria when user opens pathway from list of Statistics results feature martijn new 02/10/09
#823 Feature: Add warning message if user doesn't enter expression in Statistics calculation feature martijn assigned 02/12/09
#877 Feature: Add searching capabilities for pathway name or keyword feature martijn new 04/13/09
#897 Advanced pathway search feature martijn new 05/11/09
#899 Magnifier glass feature martijn new 05/11/09
#900 Generic color-sets feature martijn new 05/11/09
#938 visualization dialog setup is not logic feature martijn new 06/20/09
#941 Visualization tweaks feature martijn new 07/05/09
#944 Website to list pathvisio plugins feature martijn new 07/06/09
#945 Plugin downloader for pathvisio feature martijn new 07/06/09
#947 smart guides feature martijn new 07/06/09
#1012 SBGN drawing feature martijn new 10/20/09
#1013 word-wrap for node labels feature martijn new 10/21/09
#1014 set background color for nodes feature martijn new 10/21/09
#1028 Make it possible to control positioning of polygonal curves feature martijn new 10/29/09
#1039 Add ability to turn text 90 deg. in DataNode feature martijn new 11/17/09
#1041 Non editable type of group feature margot new 11/17/09
#1043 Connector with 45 degree connection to Anchor feature martijn new 11/17/09
#1046 Create plugin hook to add tab to PathwayElementDialog feature Milestone 26 martijn new 11/17/09
#1048 Add "thick" to the line style feature martijn new 11/24/09
#1110 Feature: Make T-bar the same as mim-inhibition feature martijn new 02/04/10
#1123 Feedback on new PV features: line thickness, alignment, shapes feature martijn new 02/10/10
#1168 GML import / export feature martijn new 04/25/10
#1180 Improve the dialog for creating visualizations and color sets feature liubing new 05/15/10
#1181 Office like toolbar for drawing objects feature liubing new 05/15/10
#1182 Species search feature liubing new 05/15/10
#1184 mini-map feature liubing new 05/15/10
#1185 zoom with scrollwheel feature liubing new 05/15/10
#1187 improving color selection feature liubing new 05/15/10
#1188 implementing grid snap feature feature liubing new 05/15/10
#1210 Modify resize function to preserve width-height ratio feature liubing new 06/11/10
#1211 Draw additional shapes for PathVisio feature liubing new 06/11/10
#1215 GPML: Pathway.Graphics should be non-optional feature martijn new 06/19/10
#1219 Changing labels in legend feature martijn new 06/28/10
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