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Revision 1429, 0.6 KB
(checked in by thomas, 3 years ago)
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added support for line anchors
added new template for reaction
added small perl script to convert multiple pathways (e.g. from mapp to gpml)
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| 1 | use File::Find; |
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| 2 | use warnings; |
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| 3 | use strict; |
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| 4 | use Cwd; |
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| 5 | |
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| 6 | my $dir = shift(@ARGV); |
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| 7 | my $ext_in = shift(@ARGV); |
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| 8 | my $ext_out = shift(@ARGV); |
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| 9 | |
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| 10 | print("Converting all $ext_in files in $dir to $ext_out files\n"); |
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| 11 | |
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| 12 | my $curr_dir = getcwd(); |
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| 13 | |
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| 14 | find(\&edits, $dir); |
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| 15 | |
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| 16 | sub edits() { |
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| 17 | my $file = $_; |
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| 18 | if($file =~ /.$ext_in$/) { |
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| 19 | print "File name is $_\n\t\tFull path is $File::Find::name\n"; |
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| 20 | my $newfile = $file; |
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| 21 | $newfile =~ s/.$ext_in$/.$ext_out/; |
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| 22 | my $cmd = "java -jar \"$curr_dir/pathvisio_core.jar\" \"$file\" \"$newfile\""; |
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| 23 | print("Executing: $cmd\n"); |
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| 24 | system($cmd); |
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| 25 | } |
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| 26 | } |
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