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../
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docs
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320
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4 years
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martijn:
deleted double files
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example-data
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2065
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2 years
|
martijn:
improvements in importer:
* properly handle long sample names (with test …
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lib
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3260
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16 hours
|
martijn:
Update to bridgedb v1.0.2
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lib-build
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3056
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6 months
|
martijn:
Upgrade to newer version of checkstyle
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plugins
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3251
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4 days
|
martijn:
programmatic hook for user to add new shapes to the side-bar tab
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resources
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3252
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4 days
|
martijn:
update some icons (change background to transparent)
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rfc
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2889
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10 months
|
martijn:
Old rfc cleanup
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src
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3261
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16 hours
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martijn:
Remove problematic @Overrides
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test
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3173
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3 months
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martijn:
Fix deletion, c/p, undo and read / write of States
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testData
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3081
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6 months
|
martijn:
two GPML.xsd tweaks: Remove unused PathwayRef?, use Xref with …
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tools
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3238
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7 days
|
KristinaHanspers:
Parser for PV html exports to MediaWiki? ImageMap? format, with links to …
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|
webstart
|
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3149
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5 months
|
martijn:
Update webstart to new bridgedb libs
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www
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|
450
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4 years
|
thomas:
removed old webstart file in www
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.gitignore
|
255 bytes |
3033
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6 months
|
thomas:
added .gitignore file, to prevent checking in files like resources.jar / …
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build.xml
|
24.1 KB |
3266
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11 hours
|
martijn:
Update version no
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CHANGELOG.txt
|
0.7 KB |
1275
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3 years
|
martijn:
Changed version strings to "1.1 (trunk)" and "(with experimental …
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CONTRIBUTORS.txt
|
126 bytes |
918
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3 years
|
martijn:
* Added missing license headers
* Changed copyright message to "Copyright …
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convert.pl
|
0.6 KB |
1429
|
3 years
|
thomas:
added support for line anchors
added new template for reaction
added small …
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convert.sh
|
84 bytes |
2102
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2 years
|
martijn:
Added dist-clean target for extra cleanliness, simplified gpmldiff and …
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diffview.sh
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171 bytes |
1300
|
3 years
|
martijn:
* cleanup tools/gpmldiff, added a testcase
* made gpmldiff.sh and …
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GPML2007.xsd
|
22.1 KB |
2236
|
22 months
|
martijn:
Renamed "Modification" to "State", to include things like activation
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GPML2008a.xsd
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23.7 KB |
3048
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6 months
|
martijn:
Branched off new version of GPML.xsd
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GPML.xsd
|
17.9 KB |
3081
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6 months
|
martijn:
two GPML.xsd tweaks: Remove unused PathwayRef?, use Xref with …
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|
gpmldiff.sh
|
89 bytes |
2656
|
13 months
|
martijn:
Various bugfixes in gpmlpatch
|
|
gpmlpatch.sh
|
76 bytes |
2656
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13 months
|
martijn:
Various bugfixes in gpmlpatch
|
|
LICENSE-2.0.txt
|
11.1 KB |
554
|
4 years
|
martijn:
Added copyright notice and licenses for all included libraries
The header …
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MAPPTmpl.gtp
|
180.0 KB |
463
|
4 years
|
www-data:
fixed bug #45: converter script works, and now works on any computer as …
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NOTICE.txt
|
1.9 KB |
1876
|
2 years
|
martijn:
added jgoodies forms lib
FormLayout?-ified first page
FormLayout?-ified …
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pathvisio.bat
|
57 bytes |
3085
|
6 months
|
martijn:
Updated PathVisio innoSetup script
|
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PathVisio.ipr
|
37.7 KB |
2940
|
9 months
|
martijn:
IntelliJ IDEA config files, contributed by Mark Woon
|
|
pathvisio.iss
|
2.3 KB |
3266
|
11 hours
|
martijn:
Update version no
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|
pathvisio.sh
|
233 bytes |
2474
|
18 months
|
martijn:
Making distributable zip:
- Simplified start scripts, removed references …
|
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pvicon.ico
|
2.2 KB |
3140
|
5 months
|
martijn:
Add windows icon to installer, fixes #1116
|
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readme.txt
|
4.1 KB |
537
|
4 years
|
martijn:
minor change
|
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remove_signature.sh
|
34 bytes |
2960
|
8 months
|
thomas:
- unsigned jars in lib (needed to support self signed certificate)
- added …
|
|
run_webstart.sh
|
311 bytes |
973
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3 years
|
martijn:
Merged pathvisio start scripts into one with options
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SciTE.properties
|
0.5 KB |
697
|
3 years
|
martijn:
fixed validity of gpml files
|
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test-procedure.txt
|
2.1 KB |
1376
|
3 years
|
martijn:
* Added GexManager?, similar to GdbManager?
* Renamed Gex to SimpleGex?. …
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XMLSchema.xsd
|
85.6 KB |
379
|
4 years
|
martijn:
Updated schema to handle waypoints in a line.
|
